Hi Martin,
I checked if there were some missing libraries, but I didn’t see anything
strange. Also, I opened CCP4i2 from Terminal as you told me, and here is the
output:
CProjectViewer.openTask loading
/home/msa-group/Documents/Procesing/ccp4/Tub6c21B/CCP4_JOBS/job_2/input_params.xml
None
<class 'core.CCP4Data.CInt'>
<PySide2.QtCore.SignalInstance object at 0x792aae1cf370>
None
<class 'core.CCP4Data.CInt'>
<PySide2.QtCore.SignalInstance object at 0x792aae1cf370>
None
<class 'core.CCP4Data.CInt'>
<PySide2.QtCore.SignalInstance object at 0x792aae1cf370>
None
<class 'core.CCP4Data.CInt'>
<PySide2.QtCore.SignalInstance object at 0x792aae1cf370>
None
<class 'core.CCP4Data.CInt'>
<PySide2.QtCore.SignalInstance object at 0x792aae05bab0>
None
<class 'core.CCP4Data.CInt'>
<PySide2.QtCore.SignalInstance object at 0x792aae05bab0>
None
<class 'core.CCP4Data.CInt'>
<PySide2.QtCore.SignalInstance object at 0x792aae05bab0>
None
<class 'core.CCP4Data.CInt'>
<PySide2.QtCore.SignalInstance object at 0x792aae05bab0>
None
<class 'core.CCP4Data.CInt'>
<PySide2.QtCore.SignalInstance object at 0x792aae05bab0>
None
<class 'core.CCP4Data.CInt'>
<PySide2.QtCore.SignalInstance object at 0x792aae05bab0>
None
<class 'core.CCP4Data.CInt'>
<PySide2.QtCore.SignalInstance object at 0x792aae05bab0>
None
<class 'core.CCP4Data.CInt'>
<PySide2.QtCore.SignalInstance object at 0x792aae05bab0>
None
<class 'core.CCP4Data.CInt'>
<PySide2.QtCore.SignalInstance object at 0x792aae05bab0>
None
<class 'core.CCP4Data.CInt'>
<PySide2.QtCore.SignalInstance object at 0x792aae05bab0>
None
<class 'core.CCP4Data.CInt'>
<PySide2.QtCore.SignalInstance object at 0x792aae05bab0>
None
<class 'core.CCP4Data.CInt'>
<PySide2.QtCore.SignalInstance object at 0x792aae05bab0>
markCIFframe
SYMINFO file set to /opt/xtal/ccp4-9/lib/data/syminfo.lib
extractMtzData listOfCells [] Ndatasets 0
Report available?
opentask times total 0.19353961944580078
opentask times drawing 0.10834431648254395
CWebPage.acceptNavigationRequest
PySide2.QtCore.QUrl('http://127.0.0.1:43434/database/?getProjectJobFile?projectId=626c0636cf4811efb5e5cfae8e23a495?fileName=report.html?jobNumber=2’)
Thanks for your help
Kind regards,
Jaime
> On 14 Jan 2025, at 10:28, Martin Malý <[email protected]> wrote:
>
> Dear Jaime and Eleanor,
>
> That's strange, graphs work for in my Ubuntu 24.04. You may check missing
> libraries: https://www.ccp4.ac.uk/download/doc/known_issues_linux.html
> Can you try to start it from terminal (command `ccp4i2`), click on the job 2
> to get the report and then send us all the output which is in the terminal?
> There may be a hint what is wrong.
>
> Eleanor, which system do you use, I suppose Mac?
>
> Cheers,
> Martin
>
>
>
> On 13/01/2025 16:02, Eleanor Dodson wrote:
>> I seem to have a similar problem - not all graphs display..
>> Eleanor Dodson
>>
>> On Mon, 13 Jan 2025 at 15:20, Jaime Larraga <[email protected]
>> <mailto:[email protected]>> wrote:
>>> Hi all,
>>>
>>> I´m having some issues with CCP4i2 on a Linux machine with Ubuntu 22.04.
>>> The version of CCP4i2 is 9.0.005. I can’t see any of the different graphics
>>> in the Aimless results (image attached). The numerical results and the log
>>> files are correctly displayed but with no graphics. I deactivated the 3D
>>> vision in the preferences menu to see if I could fix it but with no change.
>>> I hope you can help me with this issue.
>>>
>>> Many thanks,
>>>
>>> Regards
>>>
>>> Jaime Larraga Criado, PhD
>>> Estructura y Función del Citoesqueleto. Farmacología y Vacunas (Lab 308)
>>> Centro de Investigaciones Biológicas Margarita Salas (CIBMS-CSIC)
>>> Ramiro de Maeztu 9 Madrid, España
>>> Teléfono: 34 91 837 31 12 (Ext. 442701)
>>> email: [email protected] <mailto:[email protected]>
>>> <ColorCSIC.jpg>
>>>
>>> <Screenshot at 2025-01-10 13-29-51.png>
>>>
>>>
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