It is definitely possible, however, after PDB deposition all the waters will be 
sorted out into chain S anyways… same with ligands, and sugars.

--
Kelvin Lau
https://people.epfl.ch/kelvin.lau

Scientist - Protein production and structure core facility – PTPSP
Co-President – EPFL Scientific Staff Association – ELSA

EPFL SV PTECH PTPSP
AI 2146 (Bâtiment AI)
Station 19
CH-1015 Lausanne
Switzerland
Email: [email protected]<mailto:[email protected]>
Phone: +41 21 69 30267<tel:+41%2021%2069%C2%A030267>
If unreachable: +41 21 69 34494<tel:+41%2021%2069%C2%A030267>


On 13.08.2025, 13:21, "CCP4 bulletin board on behalf of Firdous Tarique" 
<[email protected]<mailto:[email protected]> on behalf of 
[email protected]<mailto:[email protected]>> wrote:

Hello everyone

I have a situation where the water molecules in my protein chains are not named 
correctly. For example I want water molecules in protein Chain A to be named as 
Chain A but few water molecules are named as chain B. As the water numbers in 
hundreds it is difficult to do it manually. Is there a way where water 
molecules near chain A (let's say within 3.5 A) are automatically renamed as 
chain A ?

Any help is appreciated

Best

Firdous

________________________________

To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1

########################################################################

To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1

This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list 
hosted by www.jiscmail.ac.uk, terms & conditions are available at 
https://www.jiscmail.ac.uk/policyandsecurity/

Reply via email to