On Wednesday 23 November 2005 16:56, [EMAIL PROTECTED] wrote: > I am new to CDK as well as java. After installing Java 1.5, ant 1.6.5, > taverna, CDK (release 20050826), cdk-taverna (release 20051018) on my > RedHat box (Enterprise 3.0), I have the following problems: > > 1. When running 'ant run' I get the follwing error message: > > ______________ > > dist.init: > > compile-needed-test: > > compile-module: > > run: > [java] Exception in thread "main" > java.lang.NoClassDefFoundError: > org/openscience/cdk/applications/FileConvertor > ______________ > > I don't know if this is something serious but I woudl have expected this > script to work ...
Does CDK get compiled? (it seems to work for me) > 2. After installing taverna (no proxys enabled) and copying the > cdk-taverna.jar and cdk.jar to the lib directory I am not able to start a > simple 'parse smile' workflow. I get the following error Only copy cdk-taverna.jar; not the cdk.jar too. The former should contain all required CDK classes itself. > __________________________ > > ERROR 2005-11-23 16:50:31,433 > (org.embl.ebi.escience.baclava.AssigningServiceClient:123) - No mapping > found for namespace type wfDefinition <snip> These were really Taverna errors... > Caused by: java.lang.NoSuchMethodError: > org.openscience.cdk.AtomContainer.addAtom(Lorg/openscience/cdk/interfaces/A >tom;)V at > ___________________________ This really is a version conflict, I think. Remove the cdk.jar and let me know what that gives... Egon -- [EMAIL PROTECTED] Blog: http://chem-bla-ics.blogspot.com/ GPG: 1024D/D6336BA6 ------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://ads.osdn.com/?ad_id=7637&alloc_id=16865&op=click _______________________________________________ Cdk-user mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/cdk-user
