Hi Egon,

On Jul 04, Egon Willighagen wrote:
> 
> Second problem. Especially those atomic descriptors which depend on the whole 
> molecule to be calculated, need to do this only once, while the above 
> retrieves the values atom by atom. An alternative API could be
> 
>   public DescriptorValue calculate(IAtomContainer container) 
>     throws CDKException

This method signature has a problem, because it returns just one value (or
molecular descriptor in other words) per atom container. It should return
a vector, an array, or an iterator for atomic descriptors instead.

Best wishes,
Sulev

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