Hi Phani, CML requires Java 1.5, and the CDK build system should detect wether it is available or that Java 1.4 is installed. Depending on that, it should compile the CML depending stuff. Clearly, this build system is broken, as it tries to compile Java 1.5 depending code, with your Java 1.4 compiler.
A simple work around is to install the Java JDK 1.5 or 1.6. Please consider that. Regards, Egon On Wednesday 20 December 2006 08:38, phanirao palivela wrote: > ---------------------------------------------------------------------- > > Message: 1 > Date: Sat, 16 Dec 2006 11:20:12 +0100 > From: Egon Willighagen > Subject: Re: [Cdk-user] New to Cdk > To: [email protected] > Message-ID: <[EMAIL PROTECTED]> > Content-Type: text/plain; charset="iso-8859-15" > > On Friday 15 December 2006 11:35, phanirao palivela wrote: > > this is phani... iam student of Biochemistry and i wnt to work this > > cdk .. and also i have the knowledge of java..could u suggest me in what > > way i am able to work with this cdk.. > > Hi Phani, > > the first step would be to download the latest released distribution at > [1], install ant from [2] and compile it. Then browse the documentation > [3], and possibly look at the JUnit test in the org.openscience.cdk.test.* > packages which contains *a lot of* example code. If you are looking for > specific code, then our keyword list is rather informative [4]. > > Just email of you have more questions, > > Looking forward to hearing from you, > > Egon Willighagen > > 1.http://sourceforge.net/project/showfiles.php?group_id=20024 > 2.http://ant.apache.org/ > 3.http://cdk.sourceforge.net/api/ > 4.http://cheminfo.informatics.indiana.edu/~rguha/code/java/nightly/keywords >.html > > > ........................................................................... >........................................................... > ........................................................................... >....................................................... Hi.. > Thanx for sending those links...i downloaded everything from that > links and i downloaded (cdk-source-20060718) ....everything is working > perfectly when iam excuted by using ant..... but iam getting following > errors...... > i dont know what is the problem ... > could any one suggest me for redusing those problems,,,, > follwing are the erros... > > [javadoc] Loading source files for package > org.openscience.cdk.test.config.ato mtypes... > [javadoc] Loading source files for package > org.openscience.cdk.test.config.iso topes... > [javadoc] Loading source files for package > org.openscience.cdk.test.controller ... > [javadoc] Loading source files for package > org.openscience.cdk.test.database.. . > [javadoc] Loading source files for package > org.openscience.cdk.test.debug... [javadoc] Loading source files for > package org.openscience.cdk.test.dict... [javadoc] Loading source files for > package org.openscience.cdk.test.event... [javadoc] Loading source files > for package org.openscience.cdk.test.exception. .. > [javadoc] Loading source files for package > org.openscience.cdk.test.fingerprin t... > [javadoc] Loading source files for package > org.openscience.cdk.test.geometry.. . > [javadoc] Loading source files for package > org.openscience.cdk.test.geometry.a lignment... > [javadoc] Loading source files for package > org.openscience.cdk.test.graph... [javadoc] Loading source files for > package org.openscience.cdk.test.graph.inva riant... > [javadoc] Loading source files for package > org.openscience.cdk.test.graph.rebo nd... > [javadoc] Loading source files for package > org.openscience.cdk.test.gui.smiles ... > [javadoc] Loading source files for package > org.openscience.cdk.test.index... [javadoc] Loading source files for > package org.openscience.cdk.test.internet.. . > [javadoc] Loading source files for package org.openscience.cdk.test.io... > [javadoc] Loading source files for package > org.openscience.cdk.test.io.cml... [javadoc] Loading source files for > package org.openscience.cdk.test.io.iterato r... > [javadoc] Loading source files for package > org.openscience.cdk.test.isomorphis m... > [javadoc] Loading source files for package > org.openscience.cdk.test.isomorphis m.matchers... > [javadoc] Loading source files for package > org.openscience.cdk.test.iupac... [javadoc] Loading source files for > package org.openscience.cdk.test.layout... [javadoc] Loading source files > for package org.openscience.cdk.test.libio.joel ib... > [javadoc] Loading source files for package > org.openscience.cdk.test.libio.open babel... > [javadoc] Loading source files for package > org.openscience.cdk.test.libio.weka ... > [javadoc] Loading source files for package > org.openscience.cdk.test.limitation s... > [javadoc] Loading source files for package > org.openscience.cdk.test.limitation s.tools... > [javadoc] Loading source files for package > org.openscience.cdk.test.math... [javadoc] Loading source files for package > org.openscience.cdk.test.math.qm... [javadoc] Loading source files for > package org.openscience.cdk.test.modeling.b uilder3d... > [javadoc] Loading source files for package > org.openscience.cdk.test.modeling.f orcefield... > [javadoc] Loading source files for package > org.openscience.cdk.test.nonotify.. . > [javadoc] Loading source files for package > org.openscience.cdk.test.qsar... [javadoc] Loading source files for package > org.openscience.cdk.test.qsar.descr iptors.atomic... > [javadoc] Loading source files for package > org.openscience.cdk.test.qsar.descr iptors.bond... > [javadoc] Loading source files for package > org.openscience.cdk.test.qsar.descr iptors.molecular... > [javadoc] Loading source files for package > org.openscience.cdk.test.qsar.model .R... > [javadoc] Loading source files for package > org.openscience.cdk.test.qsar.model .R2... > [javadoc] Loading source files for package > org.openscience.cdk.test.qsar.model .weka... > [javadoc] Loading source files for package > org.openscience.cdk.test.reaction.t ype... > [javadoc] Loading source files for package > org.openscience.cdk.test.renderer.. . > [javadoc] Loading source files for package > org.openscience.cdk.test.ringsearch ... > [javadoc] Loading source files for package > org.openscience.cdk.test.ringsearch .cyclebasis... > [javadoc] Loading source files for package > org.openscience.cdk.test.similarity ... > [javadoc] Loading source files for package > org.openscience.cdk.test.smiles... [javadoc] Loading source files for > package org.openscience.cdk.test.smiles.sma rts... > [javadoc] Loading source files for package > org.openscience.cdk.test.structgen. .. > [javadoc] Loading source files for package > org.openscience.cdk.test.structgen. deterministic... > [javadoc] Loading source files for package > org.openscience.cdk.test.templates. .. > [javadoc] Loading source files for package > org.openscience.cdk.test.tools... [javadoc] Loading source files for > package org.openscience.cdk.test.tools.mani pulator... > [javadoc] Loading source files for package > org.openscience.cdk.test.validate.. . > [javadoc] Loading source files for package org.openscience.cdk.tools... > [javadoc] Loading source files for package > org.openscience.cdk.tools.features. .. > [javadoc] Loading source files for package > org.openscience.cdk.tools.manipulat or... > [javadoc] Loading source files for package > org.openscience.cdk.validate... [javadoc] Constructing Javadoc > information... > [javadoc] > E:\cdk-source-20060718\src\org\openscience\cdk\applications\Descript > orCalculator.java:65: cannot access org.xmlcml.cml.element.CMLMolecule > [javadoc] bad class file: > E:\cdk-source-20060718\jar\jumbo52.jar(org/xmlcml/cm > l/element/CMLMolecule.class) > [javadoc] class file has wrong version 49.0, should be 48.0 > [javadoc] Please remove or make sure it appears in the correct > subdirectory of the classpath. > [javadoc] import org.xmlcml.cml.element.CMLMolecule; > [javadoc] ^ > [javadoc] 1 error > [javadoc] Generating Javadoc > [javadoc] Javadoc execution > [javadoc] javadoc: Cannot find doclet class > net.sf.cdk.tools.MakeCDKSetFilesDo clet > [javadoc] 1 error > checkDocletResults: > failIfNoDocletResults: > compile-init: > checkPlatforms: > check: > dist.init: > compile-needed-test: > compile-module: > checkPlatforms: > check: > dist.init: > compile-needed-test: > compile-module: > checkPlatforms: > check: > dist.init: > compile-needed-test: > compile-module: > checkPlatforms: > check: > dist.init: > compile-needed-test: > compile-module: > checkPlatforms: > check: > dist.init: > compile-needed-test: > compile-module: > checkPlatforms: > check: > dist.init: > compile-needed-test: > compile-module: > checkPlatforms: > check: > dist.init: > compile-needed-test: > compile-module: > checkPlatforms: > check: > dist.init: > compile-needed-test: > compile-module: > checkPlatforms: > check: > dist.init: > compile-needed-test: > compile-module: > checkPlatforms: > check: > dist.init: > compile-needed-test: > compile-module: > checkPlatforms: > check: > dist.init: > compile-needed-test: > compile-module: > checkPlatforms: > check: > dist.init: > compile-needed-test: > compile-module: > checkPlatforms: > check: > dist.init: > compile-needed-test: > compile-module: > [echo] Compiling classes for CDK's libio-cml module. > [echo] Datafiles defined: true > [echo] Extra files defined: ${module.extrafiles.present} > [echo] CDK dependencies defined: true > [echo] Library dependencies defined: true > [echo] Developer Library dependencies defined: > ${module.devellibdepends.pre sent} > [delete] Deleting directory E:\cdk-source-20060718\build > [mkdir] Created dir: E:\cdk-source-20060718\build > [mkdir] Created dir: E:\cdk-source-20060718\build\src > [copy] Copying 1 file to E:\cdk-source-20060718\build\src > [javac] Compiling 1 source file to E:\cdk-source-20060718\build > [javac] > E:\cdk-source-20060718\build\src\org\openscience\cdk\io\RssWriter.ja va:43: > cannot resolve symbol > [javac] symbol : class Convertor > [javac] location: package cml > [javac] import org.openscience.cdk.libio.cml.Convertor; > [javac] ^ > [javac] > E:\cdk-source-20060718\build\src\org\openscience\cdk\io\RssWriter.ja > va:121: cannot resolve symbol > [javac] symbol : variable Convertor > [javac] location: class org.openscience.cdk.io.RssWriter > [javac] > rdfElement.addNamespaceDeclaration("cml",Convertor.N S_CML); > [javac] ^ > [javac] > E:\cdk-source-20060718\build\src\org\openscience\cdk\io\RssWriter.ja > va:190: cannot resolve symbol > [javac] symbol : class Convertor > [javac] location: class org.openscience.cdk.io.RssWriter > [javac] Convertor convertor=new Convertor(true,null); > [javac] ^ > [javac] > E:\cdk-source-20060718\build\src\org\openscience\cdk\io\RssWriter.ja > va:190: cannot resolve symbol > [javac] symbol : class Convertor > [javac] location: class org.openscience.cdk.io.RssWriter > [javac] Convertor convertor=new Convertor(true,null); > [javac] ^ > [javac] 4 errors > BUILD FAILED > E:\cdk-source-20060718\build.xml:570: The following error occurred while > executi ng this line: > E:\cdk-source-20060718\build.xml:446: Compile failed; see the compiler > error out put for details. > Total time: 1 minute 15 seconds > > > > Thanks Phani > > Send free SMS to your Friends on Mobile from your Yahoo! Messenger. > Download Now! http://messenger.yahoo.com/download.php -- http://chem-bla-ics.blogspot.com/ ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys - and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ Cdk-user mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/cdk-user
