Hi,
      Thanks  for your previous response. Now I am working on 
.mol2 files.the code is like that---
       
       1. IAtomContainer ac = (IAtomContainer)v.get(0);
       2. int natom = ac.getAtomCount();
       3. int nbond = ac.getBondCount();
       4. IAtom ele = ac.getAtomAt(3);
       5. System.out.println(ele);

after execution i got the O/P as follows---

    Atom(33018164, C, H:0, SP:0, 2D:[null], 3D:[(-0.6525, -0.3973, 0.0)], 
Fract3D:[n
ull], C:0.0, FC:0, AtomType(C.3, MBO:0.0, BOS:0.0, FC:0, H:3, NC:-2147483648, CR
:0.0, VDWR:0.0, EV:-2147483648, Isotope(0, EM:-1.0, AB:-1.0, Element(C, ID:C4, A
N:0))))

now i want to take the o/p in a string form in my program or,i want to retrieve 
Element(C, ID:C4, AN:0)  only....
i am waiting for your reply...
                                         thank you.


                                
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