On Mon, May 4, 2009 at 10:24 AM, Chris Pudney
<ch...@focal-technologies.com> wrote:
> I'm migrating some CDK code from 1.0.1 to 1.2.1 - the code performs two
> main functions:
>
> 1. 2D structure diagram generation
> 2. structure diagram rendering

Please use the CDKAtomTypeMatcher to perceive atom types; hydrogen
adding and aromaticity detection requires atom types to be recognized
in order to decide on the underlying (missing) chemistry.

Egon

-- 
Post-doc @ Uppsala University
http://chem-bla-ics.blogspot.com/

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