I filed a bug report for this (#2869859). The question is when best to do 
aromaticity detection? Is just before smiles generation ok or should we do it 
constantly when something changes?
Stefan

On Tuesday 29 September 2009 15:26:14 remy d1 wrote:
> Hi all,
>
> There is a small problem in JCP applet : aromaticity is not implemented.
> http://en.wikipedia.org/wiki/Simplified_molecular_input_line_entry_specific
>ation#Aromaticity
>
> Benzene is seen as C1=CC=CC=C1. Il should be c1ccccc1.
>
>
> Regards.
>
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-- 
Stefan Kuhn B. Sc. M. A.
Software Engineer in the Chemoinformatics and Metabolism Team
European Bioinformatics Institute (EBI)
Wellcome Trust Genome Campus
Hinxton, Cambridge CB10 1SD UK
Phone +44 1223 49 2657
Fax +44 (0)1223 494 468

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