Hi Stefan,
I've more or less managed to get it working with cdk-1.3.3 (not 1.3.4)
and jchempaint-3.0.1 ; there are few minor issues I'll be reporting later.
Stefan Kuhn wrote:
> Hi Nina,
> JCP is working (I just checked) with a checkout of the EBI cdk repository at
> http://www.ebi.ac.uk/steinbeck-srv/git/cdk. This is cdk master plus some
> patches. Since JCP is no longer integrated to cdk and since git has the
> philosophy of many repositories existing in parallel, it is not and cannot be
> guaranteed to work with any other cdk code.
>
This sounds quite scary - isn't it possible to at least define
dependencies between released packages - for example maven is excellent
at supporting these - I would be glad to help with.
I am sure I am not the only one who would like to use cdk library and
jchempaint in third party applications.
Best regards,
Nina
> Stefan
>
>
> On Thursday 08 April 2010 20:31:09 Nina Jeliazkova wrote:
>
>> Hello All,
>>
>> I am trying to upgrade a Swing application (
>> http://toxtree.sourceforge.net/ ) to use recent versions of CDK and
>> JChemPaint.
>> An embedded JChemPaint had been used successfully since 2005, but I am
>> having troubles with upgrading to recent JChemPaint 3.x versions. The
>> code below uses cdk-1.3.4 and jchempaint-3.0.1:
>>
>> IChemModel chemModel =
>> DefaultChemObjectBuilder.getInstance().newChemModel();
>> chemModel.setMoleculeSet(chemModel.getBuilder().newMoleculeSet());
>>
>> chemModel.getMoleculeSet().addAtomContainer(chemModel.getBuilder().newMolec
>> ule());
>>
>> JChemPaintPanel jcp= new JChemPaintPanel(chemModel,
>> JChemPaint.GUI_APPLICATION, false,null);
>>
>> Exception in thread "AWT-EventQueue-0" java.lang.NoSuchMethodError:
>> org.openscience.cdk.tools.ILoggingTool.debug(Ljava/lang/Object;Ljava/lang/O
>> bject;)V at
>> org.openscience.jchempaint.JChemPaintMenuHelper.createMenu(JChemPaintMenuHe
>> lper.java:89) at
>> org.openscience.jchempaint.JChemPaintMenuBar.addNormalMenuBar(JChemPaintMen
>> uBar.java:84) at
>> org.openscience.jchempaint.JChemPaintMenuBar.<init>(JChemPaintMenuBar.java:
>> 61) at
>> org.openscience.jchempaint.JChemPaintPanel.customizeView(JChemPaintPanel.ja
>> va:366) at
>> org.openscience.jchempaint.JChemPaintPanel.<init>(JChemPaintPanel.java:146)
>>
>> I have tried unsuccessfully to use cdk-jchempaint-8/9.jar with cdk-1.3.4
>> , but it doesn't recognize org.openscience.jchempaint.renderer.*
>> classes, and replacing these with org.openscience.cdk.renderer.* gives
>> some compile errors.
>>
>> Any recommendation for correct dependencies between CDK and JChemPaint
>> versions, or working examples of embedded JChemPaint will help a lot.
>>
>> Best regards,
>> Nina Jeliazkova
>>
>> ---------------------------------------------------------------------------
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>
>
>
>
------------------------------------------------------------------------------
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proactively, and fine-tune applications for parallel performance.
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http://p.sf.net/sfu/intel-sw-dev
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