On Wed, Sep 29, 2010 at 3:10 PM, Michael Krein <[email protected]> wrote:
> Dr. Guha,
>
>> iload.molecules("157.poly.sdf", type="sdf", aromaticity=FALSE,
>> typing=FALSE, isotopes=FALSE)
> Error in .jcall("org/openscience/cdk/DefaultChemObjectBuilder",
> "Lorg/openscience/cdk/DefaultChemObjectBuilder;",  :
>  method getInstance with signature
> ()Lorg/openscience/cdk/DefaultChemObjectBuilder; not found
>
>> iload.molecules("157.poly.sdf", type='sdf', aromaticity=FALSE,
>> typing=FALSE, isotopes=FALSE)
> Error in .jcall("org/openscience/cdk/DefaultChemObjectBuilder",
> "Lorg/openscience/cdk/DefaultChemObjectBuilder;",  :
>  method getInstance with signature
> ()Lorg/openscience/cdk/DefaultChemObjectBuilder; not found
>
> Maybe the solution here for me is more coffee for me.  :-P

Nope, the coffee should be for me - my mistake. It is indeed a bug.
I've updated the code in git and I'll push to CRAN in a day or two

-- 
Rajarshi Guha
NIH Chemical Genomics Center

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