Lochana,

On Tue, Jan 17, 2012 at 6:08 PM, lochana menikarachchi
<[email protected]> wrote:
> I have a sdf file with abbreviated amino acids..The CDK SDF readers seem to
> read this molecule but fails to write it back in SDF format..Is there anyway
> to expand these abbreviations?? Any other library or workaround?? The SDF is
> attached. Thanks.

this is the same problem Rajarshi was making a patch for, right?

Egon

-- 
Dr E.L. Willighagen
Postdoctoral Researcher
Department of Bioinformatics - BiGCaT
Maastricht University (http://www.bigcat.unimaas.nl/)
Homepage: http://egonw.github.com/
LinkedIn: http://se.linkedin.com/in/egonw
Blog: http://chem-bla-ics.blogspot.com/
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