This' using a different method but it gives the same listener error (I
think):
java.util.ConcurrentModificationException
at java.util.ArrayList$Itr.checkForComodification(Unknown Source)
at java.util.ArrayList$Itr.next(Unknown Source)
at
org.openscience.cdk.isomorphism.matchers.QueryChemObject.notifyChanged(QueryChemObject.java:145)
at
org.openscience.cdk.isomorphism.matchers.QueryAtom.setImplicitHydrogenCount(QueryAtom.java:180)
at
org.knime.cisrg.hyperstructures.ConvenienceTools.calculateImplicitHydrogens(ConvenienceTools.java:717)
at
org.knime.cisrg.hyperstructures.ConvenienceTools.createCommonSubgraph(ConvenienceTools.java:1342)
at
org.knime.cisrg.hyperstructures.MCSMethods.execute(MCSMethods.java:102)
at
org.knime.cisrg.hyperstructures.similarity.ExtendedIsomorphism.chemAxon_MCES(ExtendedIsomorphism.java:453)
at
org.knime.cisrg.hyperstructures.similarity.ExtendedIsomorphism.chooseAlgorithm(ExtendedIsomorphism.java:326)
at
org.knime.cisrg.hyperstructures.similarity.ExtendedIsomorphism.mcsBuilder(ExtendedIsomorphism.java:278)
at
org.knime.cisrg.hyperstructures.similarity.ExtendedIsomorphism.<init>(ExtendedIsomorphism.java:256)
at
org.knime.cisrg.hyperstructures.similarity.GraphSimilarityNodeModel$SimilarityComparator.calculateSimilarity(GraphSimilarityNodeModel.java:1637)
at
org.knime.cisrg.hyperstructures.similarity.GraphSimilarityNodeModel$1.getCells(GraphSimilarityNodeModel.java:1248)
at
org.knime.base.node.parallel.appender.ThreadedColAppenderNodeModel$Submitter$1.call(ThreadedColAppenderNodeModel.java:148)
at
org.knime.base.node.parallel.appender.ThreadedColAppenderNodeModel$Submitter$1.call(ThreadedColAppenderNodeModel.java:1)
at
org.knime.core.util.ThreadUtils$CallableWithContextImpl.callWithContext(ThreadUtils.java:344)
at
org.knime.core.util.ThreadUtils$CallableWithContext.call(ThreadUtils.java:244)
at java.util.concurrent.FutureTask.run(Unknown Source)
at org.knime.core.util.ThreadPool$MyFuture.run(ThreadPool.java:125)
at org.knime.core.util.ThreadPool$Worker.run(ThreadPool.java:248)
On 6 August 2015 at 16:40, John M <john.wilkinson...@gmail.com> wrote:
> > Though the code you've quoted is the part that's causing the bug.
>
> Can you provide the full stack place please.
>
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