Hi,
Could someone provide an example of changing default properties of
DepictionGenerator, please? Is it really possible in 1.5.13 version of cdk?
Here is a a description of the problem I'm trying to solve.
I created an atom container from SMILES string
"[H][C@]1(C[C@]2([H])CC[C@]([H])(C1)N2C)OC(c1ccccc1)c1ccccc1"?.
Then I created an instance of DepictionGenerator:
DepictionGenerator generator = new DepictionGenerator(font);
And finally created "depiction":
Depiction depiction = generator.depict(atomContainer);
With this approach after serialization to .png or .svg, I see molecule without
CH3 group, which is, I guess, due to default setting of
SymbolVisibility.iupacRecommendationsWithoutTerminalCarbon().
I'd like to use SymbolVisibility.iupacRecommendations(), but it is not
currently possible with DepictionGenerator because of the reasons described in
this thread:
https://sourceforge.net/p/cdk/mailman/message/34796852/
I found a workaround by using AtomContainerRenderer, but in this case I don't
know how to autoscale the resulting image.
Yours sincerely,
Nikita
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