Hi I ran into an issue with the image of the porphyrin molecule. The original image from Wikipedia is: [image: image.png] I drew it as below: [image: image.png] Then I let the CDK layout the image, which did a good job except for the placement of the second lines of double bonds, as shown below. [image: image.png] I thought the explicit bond between H & N was the cause, so I replaced those N-H instances with NH, then tried again. This time it still put those second lines out, as below. [image: image.png] Any idea how to fix this?
Thanks Velusamy K. Velu (614) 323-9649 <https://peruselab.com> <https://www.linkedin.com/company/peruselab/> <https://twitter.com/PeruseLab> <https://www.facebook.com/PeruseLab/>
_______________________________________________ Cdk-user mailing list Cdk-user@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/cdk-user
