Hi everyone,
Ive been creating a few models and Importing them and such to create more
complex model.
Example :
I have 2 existing files (models) promoter-RBS_repressed and protein.
These 2 respectively contain components promoter-RBS_repressed and Protein.
promoter-RBS_repressed has an input of repressorConcentration and an output
of synthesisRate.
protein has an input of synthesisRate and an output of proteinConcentration.
I want to create a single file with input: repressor concentration and
output: protein concentration.
What I have done is to create a 3rd file : repressed_protein-generator ,
create a component : repressed_protein-generator,
create connections and groups such that variables are recieved (from other
models) by repressed protein generator and 'relayed' to
promoter-RBS_repressed and any output variables from Protein are relayed to
repressed_protein-generator which can output them.
Segments of code from repressed_protein-generator:
<group>
<relationship_ref name="repressed_protein-generator"
relationship="encapsulation"/>
<component_ref component="repressed_protein-generator">
<component_ref component="promoter-RBS_repressed"/>
<component_ref component="Protein"/>
</component_ref>
</group>
......................................................
<component name="repressed_protein-generator">
<variable name="proteinConcentration" private_interface="in"
public_interface="out" units="mole"/>
<variable name="repressorConcentration" private_interface="out"
public_interface="in" units="mole"/>
</component>
.....................................................
<connection>
<map_components component_1="repressed_protein-generator"
component_2="promoter-RBS_repressed"/>
<map_variables variable_1="repressorConcentration"
variable_2="repressorConcentration"/>
</connection>
<connection>
<map_components component_1="promoter-RBS_repressed"
component_2="Protein"/>
<map_variables variable_1="synthesisRate"
variable_2="synthesisRate"/>
</connection>
<connection>
<map_components component_1="Protein"
component_2="repressed_protein-generator"/>
<map_variables variable_1="proteinConcentration"
variable_2="proteinConcentration"/>
</connection>
My question is : Is there a better way (more natural way..) to do this in
CellML ?
Thank you.
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