> I cc:ed Ion as I must confess I didn't follow developments on VCell neither. > Maybe he could state on how things evolved. > > Additionally, Richard Adams at Edinburgh University did some work on Java > library development for SED-ML. > It is all at: > http://miase.svn.sourceforge.net/viewvc/miase/sed-ml/jlibsedml/ > There also is an online SED-ML file validator at: > http://www.bioinformatics.ed.ac.uk:8080/SBSVisualWebApp/html/sedml/ > Richard said, it is all still preliminary, but we were discussing on > continuing the development, > so maybe it would be a good idea to get in contact with him - so as not to > do things twice... > I also cc:ed Richard :-)
thanks Dagmar (and Richard for the correction), if I get a chance I'll be having a look - although my Java is not particularly strong. > SED-ML would allow you [being in Auckland] to send me [being in Rostock] the > *description* of what you did, so that I can launch a simulation tool and > repeat the steps you did. > If you want to reuse the simulation data ("results"), you probably want to > use efforts such as SBRML from Pedro Mendes' group to do so > (http://www.comp-sys-bio.org/tiki-index.php?page=SBRML). > You could include a reference to a result data set encoded in SBRML in your > SED-ML file (as a note only, currently) to refer to the result data from > your simulation description. > ... if that is what you want ... :-) yep. it will certainly be interesting to see how this evolves - whether people actually want to share results or if you always want to re-run the simulation in your own tool :) Cheers, Andre. _______________________________________________ cellml-discussion mailing list cellml-discussion@cellml.org http://www.cellml.org/mailman/listinfo/cellml-discussion