Hi Randall

I installed the tools and the repository code does runs in OpenCell. However 
when I clone the distribution and edit anything I get the same java error I got 
before the Xcode tools were installed. I have no idea what I could be doing 
wrong..

Cheers Mark

On 26/02/2013, at 8:36 PM, Randall Britten <r.brit...@auckland.ac.nz> wrote:

> Hi Mark
> 
> I use Mac OS X 10.8.2.  OpenCell v0.8 runs fine, as far as I can tell.  As
> Andre said, you need to install Xcode and the Xcode command line tools
> (they are free from the Apple App store).  (This is all just an interim
> measure until the imminent release of OpenCOR.  Development and
> maintenance of OpenCell ceased after the v0.8 release in 2010, in favour
> of the OpenCOR project.  We will nevertheless try support you if you
> decide to use it.)
> 
> Regards,
> Randall
> 
> 
> 
> On 26/02/13 8:08 PM, "Mark Cannell" <mark.cann...@bristol.ac.uk> wrote:
> 
>> Hi All, Peter
>> 
>> Could not seem to get OpenCell to run but OpenCor works and looks like a
>> great tool. I look forward to version 1.0 and will see how 0.0 runs in
>> the meantime, 
>> 
>> Thanks, Mark
>> 
>> On 26/02/2013, at 3:35 AM, Peter Hunter <p.hun...@auckland.ac.nz> wrote:
>> 
>>> Hi Mark,
>>> 
>>> FYI, there is a new CellML simulation tool called OpenCOR being
>>> developed by Alan Garny that is becoming our primary platform for
>>> CellML-based modelling (see
>>> http://www.cellml.org/getting-started/tutorials/opencordemo for download
>>> instructions). This will shortly have CellML authoring capability and is
>>> a more robust environment than OpenCell, although I currently use both -
>>> OpenCell for authoring models and OpenCOR for running simulations.
>>> OpenCOR has facilities for annotating models against bio-ontologies such
>>> as GO, although access to the Ricordo webservices for providing the
>>> ontologies is a wee way off (hopefully achieved by the time of the
>>> CellML workshop in Auckland in a few weeks).
>>> 
>>> Rgds, Peter
>>> 
>>> 
>>> On 26/02/2013 4:37 a.m., Mark Cannell wrote:
>>>> Hi All
>>>> 
>>>> I've been trying to test the new open cell 0.8 on a mac but all I get
>>>> is a java runtime error and I have no idea how to get over it:
>>>> 
>>>> [Exception... "Component returned failure code: 0x80004005
>>>> (NS_ERROR_FAILURE)
>>>> [cellml_servicesICellMLIntegrationService.compileModelODE]"  nsresult:
>>>> "0x80004005 (NS_ERROR_FAILURE)"  location: "JS frame ::
>>>> chrome://opencell/content/util/Integration.js :: StartCollectingResults
>>>> :: line 18"  data: no]
>>>> 
>>>> Has anyone run open cell on a mac? I used cor0.8 under a windows
>>>> emulator and that worked Ok but trying to use an integrated
>>>> platform/interface for student teaching is not workingÅ 
>>>> 
>>>> Any ideas?
>>>> 
>>>> Thanks
>>>> 
>>>> Mark  B. Cannell Ph.D. FRSNZ
>>>> Professor of Cardiac Cell Biology
>>>> School of Physiology&  Pharmacology
>>>> Medical Sciences Building
>>>> University of Bristol
>>>> Bristol
>>>> BS8 1TD UK
>>>> 
>>>> mark.cann...@bristol.ac.uk
>>>> 
>>>> 
>>>> 
>>>> 
>>>> _______________________________________________
>>>> cellml-discussion mailing list
>>>> cellml-discussion@cellml.org
>>>> http://lists.cellml.org/mailman/listinfo/cellml-discussion
>>> 
>>> _______________________________________________
>>> cellml-discussion mailing list
>>> cellml-discussion@cellml.org
>>> http://lists.cellml.org/mailman/listinfo/cellml-discussion
>> 
>> Mark  B. Cannell Ph.D. FRSNZ
>> Professor of Cardiac Cell Biology
>> School of Physiology&  Pharmacology
>> Medical Sciences Building
>> University of Bristol
>> Bristol
>> BS8 1TD UK
>> 
>> mark.cann...@bristol.ac.uk
>> 
>> 
>> 
>> 
>> _______________________________________________
>> cellml-discussion mailing list
>> cellml-discussion@cellml.org
>> http://lists.cellml.org/mailman/listinfo/cellml-discussion
> 
> _______________________________________________
> cellml-discussion mailing list
> cellml-discussion@cellml.org
> http://lists.cellml.org/mailman/listinfo/cellml-discussion

Mark  B. Cannell Ph.D. FRSNZ
Professor of Cardiac Cell Biology
School of Physiology&  Pharmacology
Medical Sciences Building
University of Bristol
Bristol
BS8 1TD UK

mark.cann...@bristol.ac.uk




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