For those who keep insisting that evolution has not been observed, you may want 
to read this article from the New York Times:
http://www.antiwrap.com/?1054

April 7, 2006
Study, in a First, Explains Evolution's Molecular Advance
By KENNETH CHANG

Correction Appended

By reconstructing ancient genes from long-extinct animals, scientists have for 
the first time demonstrated the step-by-step progression of how evolution 
created a new piece of molecular machinery by reusing and modifying existing 
parts.

The researchers say the findings, published today in the journal Science, offer 
a counterargument to doubters of evolution who question how a progression of 
small changes could produce the intricate mechanisms found in living cells.

"The evolution of complexity is a longstanding issue in evolutionary biology," 
said Joseph W. Thornton, professor of biology at the University of Oregon and 
lead author of the paper. "We wanted to understand how this system evolved at 
the molecular level. There's no scientific controversy over whether this system 
evolved. The question for scientists is how it evolved, and that's what our 
study showed."

Charles Darwin wrote in The Origin of Species, "If it would be demonstrated 
that any complex organ existed which could not possibly have formed by 
numerous, successive, slight modifications, my theory would absolutely break 
down."

Discoveries like that announced this week of a fish with limblike fins have 
filled in the transitions between species. New molecular biology techniques let 
scientists begin to reconstruct how the processes inside a cell evolved over 
millions of years.

Dr. Thornton's experiments focused on two hormone receptors. One is a component 
of stress response systems. The other, while similar in shape, takes part in 
different biological processes, including kidney function in higher animals.

Hormones and hormone receptors are protein molecules that act like pairs of 
keys and locks. Hormones fit into specific receptors, and that attachment sends 
a signal to turn on — or turn off — cell functions. The matching of 
hormones and receptors led to the question of how new hormone-and-receptor 
pairs evolved, as one without the other would appear to be useless.

The researchers found the modern equivalent of the stress hormone receptor in 
lampreys and hagfish, two surviving jawless primitive species. The team also 
found two modern equivalents of the receptor in skate, a fish related to sharks.

After looking at the genes that produced them, and comparing the genes' 
similarities and differences among the genes, the scientists concluded that all 
descended from a single common gene 450 million years ago, before animals 
emerged from oceans onto land, before the evolution of bones.

The team recreated the ancestral receptor in the laboratory and found that it 
could bind to the kidney regulating hormone, aldosterone and the stress 
hormone, cortisol.

Thus, it turned out that the receptor for aldosterone existed before 
aldosterone. Aldosterone is found just in land animals, which appeared tens of 
millions of years later.

"It had a different function and was exploited to take part in a new complex 
system when the hormone came on the scene," Dr. Thornton said.

What happened was that a glitch produced two copies of the receptor gene in the 
animal's DNA, a not-uncommon occurrence in evolution. Then, for reasons not 
understood, two major mutations made one receptor sensitive just to cortisol, 
leading to the modern version of the stress hormone receptor. The other 
receptor became specialized for kidney regulation.

Dr. Thornton said the experiments showed how evolution could and did innovate 
functions over time. "I think this is likely to be a very common theme in how 
complex molecular systems evolved," he said.

Christoph Adami, a professor of life sciences at the Keck Graduate Institute in 
Claremont, Calif. who wrote an accompanying commentary in Science, said the 
research showed how evolution "takes advantage of lucky circumstances and 
builds upon them."

Dr. Thornton said the experiment refutes the notion of "irreducible complexity" 
put forward by Michael J. Behe, a professor of biochemistry at Lehigh 
University.

Dr. Behe, a main advocate of intelligent design, the theory that life is so 
complicated that the best explanation is that it was designed by an intelligent 
being, has compared an irreducibly complex system to a mousetrap. Take away any 
piece, and the mousetrap fails to catch mice. Such all-or-none systems could 
not have arisen with incremental changes, Dr. Behe has argued.

Dr. Thornton said the key-and-lock mechanism of a hormone-receptor pair was "an 
elegant exemplar of a system that has been called irreducibly complex."

"Of course," he added, "our findings show that it is not irreducibly complex."

Dr. Behe described the results as "piddling." He wondered whether the receptors 
with the intermediate mutations would be harmful to the survival of the 
organisms and said a two-component hormone-receptor pair was too simple to be 
considered irreducibly complex. He said such a system would require at least 
three pieces and perform some specific function to fit his notion of 
irreducibly complex.

What Dr. Thornton has shown, Dr. Behe said, falls within with incremental 
changes that he allows evolutionary processes can cause.

"Even if this works, and they haven't shown that it does," Dr. Behe said, "I 
wouldn't have a problem with that. It doesn't really show that much."

Correction: April 11, 2006

An article on Friday about a molecular discovery that confirmed an aspect of 
evolutionary theory referred incorrectly to one type of molecule under study. 
The molecules that fit into receptors in the hormone system are steroids, not 
proteins.


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