Thanks Dave, I went your route.

After stepping away from the problem for half a day, I did think that perhaps 
changing the line of:
RewriteCond %{REQUEST_URI} !MAINDOMAIN1/
to
RewriteCond %{REQUEST_URI} !notexist/

might get the job done as well... basically shoving every request for that 
domain into that subfolder.. but for some reason it didn't like that.

Any other thoughts, the robots.txt will work according to Google's Webmasters 
blog... but thought I would still pose the question on properly structuring my 
htaccess.  Any idea why my change above didn't work.

Thanks for the help\! 

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