In http://reviews.llvm.org/D9600#187211, @rizsotto.mailinglist wrote:

> Could you please send me a reference to a project/use case where the 
> two-phase approach (with compilation database) could not work?


Ted Kremenek brought this issue up -- he mentioned that the build system for 
gcc, in particular, modifies its intermediates.


http://reviews.llvm.org/D9600

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