Hello everyone,
I've been trying to make Chapel from the github repo for multilocale execution
over infiniband on a Cray CS300-LC machine using the following script:
---------------------------------------------------------------------------
#!/bin/bash
source ../chapel/util/setchplenv.bash
#export CHPL_TARGET_PLATFORM=cray-cs
export CHPL_COMM=gasnet
export CHPL_COMM_SUBSTRATE=ibv
export CHPL_LAUNCHER=slurm-gasnetrun_ibv
cd $CHPL_HOME && gmake
---------------------------------------------------------------------------
However, when compiling a program, I keep getting the following errors:
---------------------------------------------------------------------------
/chapel/third-party/gasnet/install/linux64-gnu-unknown/seg-large/nodbg/lib/libgasnet-ibv-par.a(gasnet_bootstrap_mpi-PAR.o):
In function `gasneti_bootstrapSNodeBroadcast_mpi':
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x19b):
undefined reference to `ompi_mpi_byte'
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x1ba):
undefined reference to `MPI_Isend'
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x1dd):
undefined reference to `MPI_Waitall'
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x1fb):
undefined reference to `ompi_mpi_byte'
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x212):
undefined reference to `MPI_Recv'
/chapel/third-party/gasnet/install/linux64-gnu-unknown/seg-large/nodbg/lib/libgasnet-ibv-par.a(gasnet_bootstrap_mpi-PAR.o):
In function `gasneti_bootstrapBroadcast_mpi':
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x25b):
undefined reference to `ompi_mpi_byte'
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x26a):
undefined reference to `MPI_Bcast'
/chapel/third-party/gasnet/install/linux64-gnu-unknown/seg-large/nodbg/lib/libgasnet-ibv-par.a(gasnet_bootstrap_mpi-PAR.o):
In function `gasneti_bootstrapAlltoall_mpi':
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x291):
undefined reference to `ompi_mpi_byte'
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x2ab):
undefined reference to `MPI_Alltoall'
/chapel/third-party/gasnet/install/linux64-gnu-unknown/seg-large/nodbg/lib/libgasnet-ibv-par.a(gasnet_bootstrap_mpi-PAR.o):
In function `gasneti_bootstrapExchange_mpi':
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x2e0):
undefined reference to `ompi_mpi_byte'
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x2fa):
undefined reference to `MPI_Allgather'
/chapel/third-party/gasnet/install/linux64-gnu-unknown/seg-large/nodbg/lib/libgasnet-ibv-par.a(gasnet_bootstrap_mpi-PAR.o):
In function `gasneti_bootstrapBarrier_mpi':
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x319):
undefined reference to `MPI_Barrier'
/chapel/third-party/gasnet/install/linux64-gnu-unknown/seg-large/nodbg/lib/libgasnet-ibv-par.a(gasnet_bootstrap_mpi-PAR.o):
In function `gasneti_bootstrapAbort_mpi':
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x32b):
undefined reference to `MPI_Abort'
/chapel/third-party/gasnet/install/linux64-gnu-unknown/seg-large/nodbg/lib/libgasnet-ibv-par.a(gasnet_bootstrap_mpi-PAR.o):
In function `gasneti_bootstrapFini_mpi':
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x357):
undefined reference to `MPI_Comm_free'
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x365):
undefined reference to `MPI_Finalize'
/chapel/third-party/gasnet/install/linux64-gnu-unknown/seg-large/nodbg/lib/libgasnet-ibv-par.a(gasnet_bootstrap_mpi-PAR.o):
In function `gasneti_bootstrapInit_mpi':
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x389):
undefined reference to `MPI_Initialized'
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x3a3):
undefined reference to `ompi_mpi_comm_world'
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x3ac):
undefined reference to `MPI_Comm_group'
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x3b1):
undefined reference to `ompi_mpi_comm_world'
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x3bf):
undefined reference to `MPI_Comm_create'
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x3c8):
undefined reference to `MPI_Group_free'
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x3d9):
undefined reference to `MPI_Comm_size'
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x407):
undefined reference to `MPI_Comm_rank'
/chapel/third-party/gasnet/gasnet-src/other/mpi-spawner/gasnet_bootstrap_mpi.c:(.text+0x43a):
undefined reference to `MPI_Init'
collect2: ld returned 1 exit status
gmake: *** [/tmp/chpl-231304.deleteme/kmeans.tmp] Error 1
error: compiling generated source
---------------------------------------------------------------------------?
Is there a way to fix this by linking MPI / ompi?
Thank you very much,
Jake
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