Changeset: a813ea1f21b3 for MonetDB
URL: http://dev.monetdb.org/hg/MonetDB?cmd=changeset;node=a813ea1f21b3
Modified Files:
.hgtags
MonetDB.spec
NT/installer32/MonetDB-ODBC-Installer.vdproj
NT/installer32/MonetDB5-Geom-Module.vdproj
NT/installer32/MonetDB5-SQL-Installer.vdproj
NT/installer64/MonetDB-ODBC-Installer.vdproj
NT/installer64/MonetDB5-Geom-Module.vdproj
NT/installer64/MonetDB5-SQL-Installer.vdproj
NT/monetdb_config.h.in
NT/rules.msc
clients/R/MonetDB.R/DESCRIPTION
clients/R/MonetDB.R/R/monetdb.R
clients/R/MonetDB.R/src/mapi.c
clients/mapiclient/tomograph.c
clients/mapilib/mapi.rc
clients/odbc/driver/driver.rc
clients/odbc/winsetup/setup.rc
clients/python2/setup.py
clients/python3/setup.py
configure.ag
debian/changelog
gdk/gdk_batop.c
gdk/gdk_select.c
gdk/libbat.rc
libversions
monetdb5/mal/mal_dataflow.c
monetdb5/modules/mal/mat.c
monetdb5/modules/mal/tablet.c
monetdb5/tools/libmonetdb5.rc
vertoo.data
Branch: mutation
Log Message:
Merge with default
diffs (truncated from 468 to 300 lines):
diff --git a/.hgtags b/.hgtags
--- a/.hgtags
+++ b/.hgtags
@@ -534,3 +534,6 @@ 508d02b1f9bf8bac7a86664b092000dd3fd20824
64caf95db680ce67235697114693cbcf4cc859eb fixed_strict_Windows_compilation
0ee7e3f578f7ed364682cae20edac923c27dfd86 Feb2013_13
89679ea95aac8f548c787cd74c35212137f5b56f Feb2013_SP4_release
+e4239a86f8032fd67169ddf4bcea6f37f32a0f8b Feb2013_15
+89679ea95aac8f548c787cd74c35212137f5b56f Feb2013_SP4_release
+11955d7a07f23672650e41dd0c9fbc9e0fc4c1af Feb2013_SP4_release
diff --git a/MonetDB.spec b/MonetDB.spec
--- a/MonetDB.spec
+++ b/MonetDB.spec
@@ -755,6 +755,9 @@ rm -f $RPM_BUILD_ROOT%{_bindir}/Maddlog
rm -fr $RPM_BUILD_ROOT
%changelog
+* Wed Sep 25 2013 Sjoerd Mullender <[email protected]> - 11.15.15-20130925
+- Rebuilt.
+
* Fri Sep 20 2013 Sjoerd Mullender <[email protected]> - 11.15.13-20130920
- Rebuilt.
diff --git a/clients/R/MonetDB.R/DESCRIPTION b/clients/R/MonetDB.R/DESCRIPTION
--- a/clients/R/MonetDB.R/DESCRIPTION
+++ b/clients/R/MonetDB.R/DESCRIPTION
@@ -1,10 +1,10 @@
Package: MonetDB.R
Version: 0.8.0
-Date: 2013-09-17
+Date: 2013-09-25
Title: Connect MonetDB to R
-Authors@R: c(person("Hannes Muehleisen", "Developer", role = c("aut",
"cre"),email = "[email protected]"),
- person("Thomas Lumley", "Contributor", role = "ctb"),
- person("Anthony Damico", "Contributor", role = "ctb"))
+Authors@R: c(person("Hannes Muehleisen", role = c("aut", "cre"),email =
"[email protected]"),
+ person("Thomas Lumley", role = "ctb"),
+ person("Anthony Damico", role = "ctb"))
Depends: DBI (>= 0.2-5), digest (>= 0.6.0), methods, utils, stats
Description: Allows to pull data from MonetDB into R
License: MPL (== 1.1)
diff --git a/clients/R/MonetDB.R/R/monetdb.R b/clients/R/MonetDB.R/R/monetdb.R
--- a/clients/R/MonetDB.R/R/monetdb.R
+++ b/clients/R/MonetDB.R/R/monetdb.R
@@ -38,7 +38,10 @@ mc <- function(dbname="demo", user="mone
dbConnect(MonetDB.R(),dbname,user,password,host,port,timeout,wait,...)
}
-setMethod("dbConnect", "MonetDBDriver", def=function(drv,dbname="demo",
user="monetdb", password="monetdb", host="localhost",port=50000, timeout=86400,
wait=FALSE,...) {
+setMethod("dbConnect", "MonetDBDriver", def=function(drv,dbname="demo",
user="monetdb", password="monetdb", host="localhost",port=50000, timeout=86400,
wait=FALSE,...,url="") {
+ if (substring(url,1,10) == "monetdb://") {
+ dbname <- url
+ }
if (substring(dbname,1,10) == "monetdb://") {
#warning("MonetDB.R: Using 'monetdb://...' URIs
in dbConnect() is deprecated. Please switch to dbname, host, port named
arguments.")
rest <- substring(dbname,11,nchar(dbname))
@@ -569,7 +572,7 @@ REPLY_SIZE <- 100 # Apparently, -1 me
.mapiCleanup <- function(conObj) {
if (conObj@connenv$lock > 0) {
- cat("II: Interrupted query execution. Beware that a
long-running query in the MonetDB server is NOT affected by this, so please
consider restarting the server & reopen the connection.\n")
+ if (DEBUG_QUERY) cat("II: Interrupted query execution.\n")
conObj@connenv$lock <- 0
}
}
diff --git a/clients/R/MonetDB.R/src/mapi.c b/clients/R/MonetDB.R/src/mapi.c
--- a/clients/R/MonetDB.R/src/mapi.c
+++ b/clients/R/MonetDB.R/src/mapi.c
@@ -6,6 +6,7 @@
#ifdef __WIN32__
#include <winsock2.h>
#include <ws2tcpip.h>
+#undef ERROR
#else
#include <sys/socket.h>
#include <netinet/in.h>
@@ -32,17 +33,29 @@ static SEXP MAPI_type_tag;
#define CHECK_MAPI_SOCK(s) do { \
if (TYPEOF(s) != EXTPTRSXP || \
- R_ExternalPtrTag(s) != MAPI_type_tag) \
- error("bad socket"); \
+ R_ExternalPtrTag(s) != MAPI_type_tag || \
+ EXTPTR_PTR(s) == NULL) \
+ error("Socket was either not successfully connected or is already
closed. Either way, it cannot be used."); \
} while (0)
SEXP mapiInit(void) {
MAPI_type_tag = install("MAPI_TYPE_TAG");
+#ifdef __WIN32__
+ // I will not even TRY to understand why this is required
+ WSADATA wsaData;
+ int iResult = WSAStartup(MAKEWORD(2, 2), &wsaData);
+ if (iResult != 0) {
+ error("WSAStartup failed: %d", iResult);
+ }
+#endif
return R_NilValue;
}
SEXP mapiDisconnect(SEXP conn) {
- CHECK_MAPI_SOCK(conn);
+ if (TYPEOF(conn) != EXTPTRSXP || R_ExternalPtrTag(conn) !=
MAPI_type_tag) {
+ warning("trying to disconnect from a non-socket.");
+ return R_NilValue;
+ }
SOCKET *sock = R_ExternalPtrAddr(conn);
if (sock != NULL) {
shutdown(*sock, 2);
@@ -74,14 +87,6 @@ SEXP mapiConnect(SEXP host, SEXP port, S
struct addrinfo hints;
struct addrinfo *result, *rp;
-#ifdef __WIN32__
- // I will not even TRY to understand why this is required
- WSADATA wsaData;
- int iResult = WSAStartup(MAKEWORD(2, 2), &wsaData);
- if (iResult != 0) {
- error("WSAStartup failed: %d", iResult);
- }
-#endif
// send/receive timeouts for socket
#ifdef __WIN32__
@@ -122,8 +127,8 @@ SEXP mapiConnect(SEXP host, SEXP port, S
// lets have a 1M buffer on this socket, ok?
int recvbuf_size = ALLOCSIZE;
- if (setsockopt(sock, SOL_SOCKET, SO_RCVBUF, &recvbuf_size,
- sizeof(recvbuf_size))) {
+ if (setsockopt(sock, SOL_SOCKET, SO_RCVBUF,
+ (const char *) &recvbuf_size,
sizeof(recvbuf_size))) {
error("setsockopt failed");
}
if (connect(sock, rp->ai_addr, rp->ai_addrlen) != -1) {
@@ -234,7 +239,7 @@ SEXP mapiRead(SEXP conn) {
response_buf_len += ALLOCSIZE;
if (DEBUG) {
printf("II: Reallocating memory, new size
%lu\n",
- response_buf_len);
+ (unsigned long)
response_buf_len);
}
response_buf = realloc(response_buf, response_buf_len);
if (response_buf == NULL) {
@@ -254,7 +259,7 @@ SEXP mapiRead(SEXP conn) {
size_t i;
for (i = 0; i < response_buf_offset; i++) {
if (response_buf[i] == '\0') {
- warning("Removed a NULL character from response at
offset %lu of %lu",i,response_buf_offset);
+ warning("Removed a NULL character from response at
offset %lu of %lu",(unsigned long) i,(unsigned long) response_buf_offset);
response_buf[i] = '\t';
}
}
@@ -314,6 +319,7 @@ SEXP mapiWrite(SEXP conn, SEXP message)
}
SEXP mapiRequest(SEXP conn, SEXP message) {
+ CHECK_MAPI_SOCK(conn);
mapiWrite(conn, message);
return (mapiRead(conn));
}
diff --git a/clients/mapiclient/tomograph.c b/clients/mapiclient/tomograph.c
--- a/clients/mapiclient/tomograph.c
+++ b/clients/mapiclient/tomograph.c
@@ -793,7 +793,7 @@ static void dumpboxes(void)
//fprintf(f,""LLFMT" %f 0 0 \n",
box[i].clkstart, (box[i].memstart/1024.0));
fprintf(f, ""LLFMT" %f %f 0 0\n",
box[i].clkend, (box[i].memend / 1024.0), box[i].footend/1024.0);
} else
- if (box[i].state == PING) {
+ if (box[i].state >= PING) {
/* cpu stat events may arrive out of order,
drop those */
if ( box[i].clkstart <= e)
continue;
diff --git a/debian/changelog b/debian/changelog
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+monetdb (11.15.15-20130925) unstable; urgency=low
+
+ * Rebuilt.
+
+ -- Sjoerd Mullender <[email protected]> Wed, 25 Sep 2013 14:02:36 +0200
+
monetdb (11.15.13-20130920) unstable; urgency=low
* Rebuilt.
diff --git a/gdk/gdk_batop.c b/gdk/gdk_batop.c
--- a/gdk/gdk_batop.c
+++ b/gdk/gdk_batop.c
@@ -2247,8 +2247,8 @@ BATmergecand(BAT *a, BAT *b)
BATcheck(b, "BATmergecand");
assert(a->htype == TYPE_void);
assert(b->htype == TYPE_void);
- assert(ATOMtype(a->htype) == TYPE_oid);
- assert(ATOMtype(b->htype) == TYPE_oid);
+ assert(ATOMtype(a->ttype) == TYPE_oid);
+ assert(ATOMtype(b->ttype) == TYPE_oid);
assert(BATcount(a) <= 1 || a->tsorted);
assert(BATcount(b) <= 1 || b->tsorted);
assert(BATcount(a) <= 1 || a->tkey);
@@ -2256,7 +2256,13 @@ BATmergecand(BAT *a, BAT *b)
assert(a->T->nonil);
assert(b->T->nonil);
- /* XXX we could return a if b is empty (and v.v.) */
+ /* we could return a if b is empty (and v.v.) */
+ if ( BATcount(a) == 0){
+ return BATcopy(b, b->htype, b->ttype, 0);
+ }
+ if ( BATcount(b) == 0){
+ return BATcopy(a, a->htype, a->ttype, 0);
+ }
bn = BATnew(TYPE_void, TYPE_oid, BATcount(a) + BATcount(b));
if (bn == NULL)
@@ -2344,8 +2350,8 @@ BATintersectcand(BAT *a, BAT *b)
BATcheck(b, "BATintersectcand");
assert(a->htype == TYPE_void);
assert(b->htype == TYPE_void);
- assert(ATOMtype(a->htype) == TYPE_oid);
- assert(ATOMtype(b->htype) == TYPE_oid);
+ assert(ATOMtype(a->ttype) == TYPE_oid);
+ assert(ATOMtype(b->ttype) == TYPE_oid);
assert(a->tsorted);
assert(b->tsorted);
assert(a->tkey);
diff --git a/gdk/gdk_select.c b/gdk/gdk_select.c
--- a/gdk/gdk_select.c
+++ b/gdk/gdk_select.c
@@ -183,11 +183,11 @@ BAT_hashselect(BAT *b, BAT *s, BAT *bn,
/* inner check */
#define impscheck(CAND,TEST,ADD) \
do { \
- e = i+limit-pr_off; \
+ e = (BUN) (i+limit-pr_off+off); \
if (im[icnt] & mask) { \
if ((im[icnt] & ~innermask) == 0) { \
while (o < e && p < q) { \
- v = src[o]; \
+ v = src[o-off]; \
ADD; \
cnt++; \
p++; \
@@ -195,7 +195,7 @@ do {
\
} \
} else { \
while (o < e && p < q) { \
- v = src[o]; \
+ v = src[o-off]; \
ADD; \
cnt += (TEST); \
p++; \
@@ -223,24 +223,24 @@ do {
\
bte rpp = ATOMelmshift(IMPS_PAGE >> b->T->shift); \
CAND; \
for (i=0, dcnt=0, icnt=0; \
- (dcnt < imprints->dictcnt) && (i < w+pr_off); \
+ (dcnt < imprints->dictcnt) && (i+off < w+pr_off); \
dcnt++) { \
limit = ((BUN) d[dcnt].cnt) << rpp; \
- while ((i+limit) <= (o+pr_off)) { \
+ while ((i+limit+off) <= (o+pr_off)) { \
i += limit; \
icnt += d[dcnt].repeat?1:d[dcnt].cnt; \
dcnt++; \
limit = ((BUN) d[dcnt].cnt) << rpp; \
} \
if (!d[dcnt].repeat) { \
- limit = (BUN) 1 << rpp; \
+ limit = (BUN) 1 << rpp; \
l = icnt + d[dcnt].cnt; \
- while (i+limit <= (o+pr_off)) { \
+ while ((i+limit+off) <= (o+pr_off)) { \
icnt++; \
i += limit; \
} \
for (; \
- icnt < l && (i < w+pr_off); \
+ icnt < l && (i+off < w+pr_off); \
icnt++) { \
impscheck(CAND,TEST,ADD); \
i += limit; \
@@ -278,12 +278,12 @@ do {
\
\
if (BATcapacity(bn) < maximum) { \
impsloop(CAND, TEST, \
- buninsfix(bn, T, dst, cnt, oid, (oid)(o + off), \
+ buninsfix(bn, T, dst, cnt, oid, (oid)(o), \
(BUN) ((dbl) cnt / (dbl) (p-r) \
* (dbl) (q-p) * 1.1 + 1024), \
BATcapacity(bn) + q - p, BUN_NONE)); \
} else { \
- impsloop(CAND, TEST, dst[cnt] = (oid)(o + off)); \
+ impsloop(CAND, TEST, dst[cnt] = (oid)(o)); \
} \
} while (0)
@@ -316,8 +316,8 @@ do {
\
if (BATcapacity(bn) < maximum) { \
while (p < q) { \
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