Changeset: f3cb9156b477 for MonetDB URL: http://dev.monetdb.org/hg/MonetDB?cmd=changeset;node=f3cb9156b477 Added Files: debian/libmonetdb5-server-bam.install Modified Files: debian/control debian/monetdb5-server.install debian/rules Branch: bamloader Log Message:
Package bam module for Debian/Ubuntu. diffs (85 lines): diff --git a/debian/control b/debian/control --- a/debian/control +++ b/debian/control @@ -10,7 +10,8 @@ Vcs-Hg: http://dev.monetdb.org/hg/MonetD Build-Depends: debhelper (>= 5), autotools-dev, bison, flex, libbz2-dev, libcurl4-gnutls-dev, libgeos-dev, libgsl0-dev, libpcre3-dev, libreadline-gplv2-dev|libreadline-dev, libssl-dev, libxml2-dev, perl, - python, ruby, rubygems, unixodbc-dev, uuid-dev, zlib1g-dev, python3 + python, ruby, rubygems, unixodbc-dev, uuid-dev, zlib1g-dev, python3, + libbam-dev # Build-Depends: libraptor1-dev Standards-Version: 3.8.0 X-Python-Version: >= 2.6 @@ -216,6 +217,19 @@ Description: MonetDB5 SQL GIS support mo This package contains the interface to the GNU Scientific Library for numerical analysis (gsl). +Package: libmonetdb5-server-bam +Section: libs +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends}, monetdb5-sql +Description: MonetDB5 SQL GIS support module + MonetDB is a database management system that is developed from a + main-memory perspective with use of a fully decomposed storage model, + automatic index management, extensibility of data types and search + accelerators. It also has an SQL frontend. + . + This package contains the interface to load and query BAM (binary + version of Sequence Alignment/Map) data. + Package: monetdb5-server Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, adduser diff --git a/debian/libmonetdb5-server-bam.install b/debian/libmonetdb5-server-bam.install new file mode 100644 --- /dev/null +++ b/debian/libmonetdb5-server-bam.install @@ -0,0 +1,4 @@ +debian/tmp/usr/lib/monetdb5/autoload/*_bam.mal usr/lib/monetdb5/autoload +debian/tmp/usr/lib/monetdb5/createdb/*_bam.sql usr/lib/monetdb5/createdb +debian/tmp/usr/lib/monetdb5/bam.mal usr/lib/monetdb5 +debian/tmp/usr/lib/monetdb5/lib_bam.so usr/lib/monetdb5 diff --git a/debian/monetdb5-server.install b/debian/monetdb5-server.install --- a/debian/monetdb5-server.install +++ b/debian/monetdb5-server.install @@ -1,15 +1,16 @@ debian/tmp/usr/bin/mserver5 usr/bin debian/tmp/usr/lib/libmonetdb5.so.* usr/lib -# usr/lib/monetdb5/lib_*.so EXCEPT: lib_{geom,gsl,jaql,json,sql}.so +# usr/lib/monetdb5/lib_*.so EXCEPT: lib_{bam,geom,gsl,jaql,json,sql}.so debian/tmp/usr/lib/monetdb5/lib_lsst.so usr/lib/monetdb5 debian/tmp/usr/lib/monetdb5/lib_opt_sql_append.so usr/lib/monetdb5 debian/tmp/usr/lib/monetdb5/lib_udf.so usr/lib/monetdb5 debian/tmp/usr/lib/monetdb5/lib_vault.so usr/lib/monetdb5 -# usr/lib/monetdb5/*.mal EXCEPT: geom.mal, gsl.mal, jaql*.mal, json.mal, json_util.mal, sql*.mal +# usr/lib/monetdb5/*.mal EXCEPT: bam.mal, geom.mal, gsl.mal, jaql*.mal, json.mal, json_util.mal, sql*.mal debian/tmp/usr/lib/monetdb5/a*.mal usr/lib/monetdb5 -debian/tmp/usr/lib/monetdb5/b*.mal usr/lib/monetdb5 +debian/tmp/usr/lib/monetdb5/bat*.mal usr/lib/monetdb5 +debian/tmp/usr/lib/monetdb5/b[b-z]*.mal usr/lib/monetdb5 debian/tmp/usr/lib/monetdb5/c*.mal usr/lib/monetdb5 debian/tmp/usr/lib/monetdb5/f*.mal usr/lib/monetdb5 debian/tmp/usr/lib/monetdb5/gr*.mal usr/lib/monetdb5 @@ -32,7 +33,7 @@ debian/tmp/usr/lib/monetdb5/v*.mal usr/l debian/tmp/usr/lib/monetdb5/x*.mal usr/lib/monetdb5 debian/tmp/usr/lib/monetdb5/z*.mal usr/lib/monetdb5 -# usr/lib/monetdb5/autoload/*.mal EXCEPT: *_geom.mal, *_gsl.mal, *_jaql.mal, *_sql.mal +# usr/lib/monetdb5/autoload/*.mal EXCEPT: *_bam.mal, *_geom.mal, *_gsl.mal, *_jaql.mal, *_sql.mal debian/tmp/usr/lib/monetdb5/autoload/*_lsst.mal usr/lib/monetdb5/autoload debian/tmp/usr/lib/monetdb5/autoload/*_opt_sql_append.mal usr/lib/monetdb5/autoload debian/tmp/usr/lib/monetdb5/autoload/*_udf.mal usr/lib/monetdb5/autoload diff --git a/debian/rules b/debian/rules --- a/debian/rules +++ b/debian/rules @@ -60,6 +60,7 @@ override_dh_auto_configure: --with-readline=yes \ --with-rubygem=yes \ --with-rubygem-dir=lib/ruby/gems/1.8 \ + --with-samtools=yes \ --with-sphinxclient=no \ --with-unixodbc=yes \ --with-valgrind=no _______________________________________________ checkin-list mailing list [email protected] https://www.monetdb.org/mailman/listinfo/checkin-list
