Changeset: fa14582ec948 for MonetDB
URL: http://dev.monetdb.org/hg/MonetDB?cmd=changeset;node=fa14582ec948
Modified Files:
MonetDB.spec
Branch: Oct2014
Log Message:
Initial RPM packaging of MonetDB-R integration.
diffs (96 lines):
diff --git a/MonetDB.spec b/MonetDB.spec
--- a/MonetDB.spec
+++ b/MonetDB.spec
@@ -40,6 +40,10 @@
%define with_samtools 1
%endif
+%if %{?_with_rintegration:1}%{!?_with_rintegration:0}
+%define with_rintegration 1
+%endif
+
Name: %{name}
Version: %{version}
Release: %{release}
@@ -85,6 +89,9 @@ BuildRequires: zlib-devel
%if %{?with_samtools:1}%{!?with_samtools:0}
BuildRequires: samtools-devel
%endif
+%if %{?with_rintegration:1}%{!?with_rintegration:0}
+BuildRequires: R-core-devel
+%endif
# need to define python_sitelib on RHEL 5 and older
# no need to define python3_sitelib: it's defined by python3-devel
@@ -479,6 +486,33 @@ version of Sequence Alignment/Map) data.
%{_libdir}/monetdb5/lib_bam.so
%endif
+%if %{?_with_rintegration:1}%{!?_with_rintegration:0}
+%package R
+Summary: MonetDB5 SQL interface to the bam library
+Group: Applications/Databases
+Requires: MonetDB5-server = %{version}-%{release}
+
+%description R
+MonetDB is a database management system that is developed from a
+main-memory perspective with use of a fully decomposed storage model,
+automatic index management, extensibility of data types and search
+accelerators. It also has an SQL frontend.
+
+This package contains the interface to use the R language from within
+SQL queries.
+
+NOTE: INSTALLING THIS PACKAGE OPENS UP SECURITY ISSUES. If you don't
+know how this package affects the security of your system, do not
+install it.
+
+%files R
+%defattr(-,root,root)
+%{_includedir}/monetdb/rapi*.h
+%{_libdir}/monetdb5/rapi.*
+%{_libdir}/monetdb5/autoload/*_rapi.mal
+%{_libdir}/monetdb5/lib_rapi.so
+%endif
+
%package -n MonetDB5-server
Summary: MonetDB - Monet Database Management System
Group: Applications/Databases
@@ -528,6 +562,9 @@ fi
%exclude %{_libdir}/monetdb5/geom.mal
%endif
%exclude %{_libdir}/monetdb5/gsl.mal
+%if %{?_with_rintegration:1}%{!?_with_rintegration:0}
+%exclude %{_libdir}/monetdb5/rapi.mal
+%endif
# %exclude %{_libdir}/monetdb5/rdf.mal
%exclude %{_libdir}/monetdb5/sql.mal
%{_libdir}/monetdb5/*.mal
@@ -535,6 +572,9 @@ fi
%exclude %{_libdir}/monetdb5/autoload/*_geom.mal
%endif
%exclude %{_libdir}/monetdb5/autoload/*_gsl.mal
+%if %{?_with_rintegration:1}%{!?_with_rintegration:0}
+%exclude %{_libdir}/monetdb5/autoload/*_rapi.mal
+%endif
# %exclude %{_libdir}/monetdb5/autoload/*_rdf.mal
%exclude %{_libdir}/monetdb5/autoload/*_sql.mal
%{_libdir}/monetdb5/autoload/*.mal
@@ -542,6 +582,9 @@ fi
%exclude %{_libdir}/monetdb5/lib_geom.so
%endif
%exclude %{_libdir}/monetdb5/lib_gsl.so
+%if %{?_with_rintegration:1}%{!?_with_rintegration:0}
+%exclude %{_libdir}/monetdb5/lib_rapi.so
+%endif
%if %{?_with_samtools:1}%{!?_with_samtools:0}
%exclude %{_libdir}/monetdb5/bam.mal
%exclude %{_libdir}/monetdb5/autoload/*_bam.mal
@@ -783,6 +826,7 @@ developer, but if you do want to test, t
--enable-optimize=yes \
--enable-profile=no \
--enable-rdf=no \
+
--enable-rintegration=%{?with_rintegration:yes}%{!?with_rintegration:no} \
--enable-sql=yes \
--enable-strict=no \
--enable-testing=yes \
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