Changeset: e7298bd42967 for MonetDB
URL: http://dev.monetdb.org/hg/MonetDB?cmd=changeset;node=e7298bd42967
Added Files:
clients/R/Tests/install.timeout
Removed Files:
clients/R/MonetDB.R/DESCRIPTION
clients/R/MonetDB.R/NAMESPACE
clients/R/MonetDB.R/NEWS
clients/R/MonetDB.R/R/control.R
clients/R/MonetDB.R/R/dbapply.R
clients/R/MonetDB.R/R/dbi.R
clients/R/MonetDB.R/R/dplyr.R
clients/R/MonetDB.R/R/mapi.R
clients/R/MonetDB.R/man/MonetDB.R.Rd
clients/R/MonetDB.R/man/MonetDBLite.Rd
clients/R/MonetDB.R/man/control.Rd
clients/R/MonetDB.R/man/dbApply.Rd
clients/R/MonetDB.R/man/dbSendUpdate.Rd
clients/R/MonetDB.R/man/dbTransaction.Rd
clients/R/MonetDB.R/man/mc.Rd
clients/R/MonetDB.R/man/monetdb.read.csv.Rd
clients/R/MonetDB.R/man/monetdbRtype.Rd
clients/R/MonetDB.R/man/monetdb_queryinfo.Rd
clients/R/MonetDB.R/man/monetdbd.liststatus.Rd
clients/R/MonetDB.R/man/mq.Rd
clients/R/MonetDB.R/man/sqlitecompat.Rd
clients/R/MonetDB.R/man/src_monetdb.Rd
clients/R/MonetDB.R/src/mapisplit-r.c
clients/R/MonetDB.R/src/mapisplit.c
clients/R/MonetDB.R/src/mapisplit.h
clients/R/Tests/survey.R
clients/R/Tests/survey.reqtests
clients/R/Tests/survey.stable.err
clients/R/Tests/survey.stable.out
clients/R/build-for-cran.sh
tools/embedded/Makefile.ag
tools/embedded/Tests/All
tools/embedded/Tests/dbi.R
tools/embedded/Tests/dbi.reqtests
tools/embedded/Tests/dbi.stable.err
tools/embedded/Tests/dbi.stable.out
tools/embedded/Tests/deps-test.R
tools/embedded/Tests/deps-test.stable.err
tools/embedded/Tests/deps-test.stable.out
tools/embedded/Tests/deps-test.timeout
tools/embedded/Tests/dplyr.R
tools/embedded/Tests/install-binary.R
tools/embedded/Tests/install-binary.stable.err
tools/embedded/Tests/install-binary.stable.out
tools/embedded/Tests/install-source.R
tools/embedded/Tests/install-source.stable.err
tools/embedded/Tests/install-source.stable.out
tools/embedded/Tests/install-source.timeout
tools/embedded/Tests/install.reqtests
tools/embedded/Tests/lowlevel.R
tools/embedded/Tests/lowlevel.reqtests
tools/embedded/Tests/lowlevel.stable.err
tools/embedded/Tests/lowlevel.stable.out
tools/embedded/build-on-windows.bat
tools/embedded/build-rpkg.sh
tools/embedded/demo.c
tools/embedded/embedded.c
tools/embedded/embedded.h
tools/embedded/embeddedr.c
tools/embedded/embeddedr.h
tools/embedded/inlined_scripts.c
tools/embedded/inlined_scripts.py
tools/embedded/inlined_scripts.sh
tools/embedded/pcre-for-osx.h
tools/embedded/pkg-excludes
tools/embedded/rcheck.sh
tools/embedded/rpackage/DESCRIPTION
tools/embedded/rpackage/NAMESPACE
tools/embedded/rpackage/R/monetdb.R
tools/embedded/rpackage/configure
tools/embedded/rpackage/configure.win
tools/embedded/rpackage/man/embedded.Rd
tools/embedded/undef.h
tools/embedded/windows/libtool.sh
tools/embedded/windows/pmc.sh
tools/embedded/windows/sedscript.tpl
Modified Files:
clients/Makefile.ag
clients/R/Tests/All
clients/R/Tests/dbapply.R
clients/R/Tests/dbi.R
clients/R/Tests/dbi.stable.err
clients/R/Tests/deps-install.R
clients/R/Tests/deps-test.R
clients/R/Tests/dplyr-flights.R
clients/R/Tests/dplyr.R
clients/R/Tests/install.R
clients/R/Tests/install.stable.out
clients/R/Tests/testrandom.R
tools/Makefile.ag
Branch: Jun2016
Log Message:
Removed R client and embedded folder, updated tests
diffs (truncated from 7845 to 300 lines):
diff --git a/clients/Makefile.ag b/clients/Makefile.ag
--- a/clients/Makefile.ag
+++ b/clients/Makefile.ag
@@ -6,4 +6,4 @@
SUBDIRS = HAVE_MAPI?mapilib HAVE_MAPI?mapiclient HAVE_ODBC?odbc HAVE_PERL?perl
php examples HAVE_PYTHON2?python2 HAVE_PYTHON3?python3 NATIVE_WIN32?NT
-EXTRA_DIST_DIR = Tests R ruby
+EXTRA_DIST_DIR = Tests ruby
diff --git a/clients/R/MonetDB.R/DESCRIPTION b/clients/R/MonetDB.R/DESCRIPTION
deleted file mode 100644
--- a/clients/R/MonetDB.R/DESCRIPTION
+++ /dev/null
@@ -1,15 +0,0 @@
-Package: MonetDB.R
-Version: 1.0.2
-Title: Connect MonetDB to R
-Authors@R: c(person("Hannes Muehleisen", role = c("aut", "cre"),email =
"[email protected]"),
- person("Anthony Damico", role = "aut"),
- person("Thomas Lumley", role = "ctb"))
-Author: Hannes Muehleisen [aut, cre], Anthony Damico [aut], Thomas Lumley [ctb]
-Maintainer: Hannes Muehleisen <[email protected]>
-Imports: DBI (>= 0.3.1), digest (>= 0.6.4), methods, codetools
-Enhances: dplyr (>= 0.3.0), MonetDBLite
-Description: Allows to pull data from MonetDB into R. Includes a DBI
implementation and a dplyr backend.
-License: MPL (== 2.0)
-URL: http://www.monetdb.org
-SystemRequirements: MonetDB, available from http://www.monetdb.org or
MonetDBLite R package
-Collate: mapi.R dbi.R dbapply.R dplyr.R control.R
diff --git a/clients/R/MonetDB.R/NAMESPACE b/clients/R/MonetDB.R/NAMESPACE
deleted file mode 100644
--- a/clients/R/MonetDB.R/NAMESPACE
+++ /dev/null
@@ -1,24 +0,0 @@
-import(DBI,digest,methods,codetools,utils)
-
-# export only driver constructor, everything else is DBI stuff..
-export(MonetDB,MonetR,MonetDBR,MonetDB.R)
-export(MonetDBLite,monetdblite,RMonetDBLite,rmonetdblite)
-export(monet.read.csv,monetdb.read.csv)
-# those are not in the DBI
-exportMethods(dbSendUpdate,dbSendUpdateAsync,dbTransaction,mdbapply,isIdCurrent,initExtension)
-# shorthands
-export(mc,mq)
-useDynLib(MonetDB.R)
-
-# control.R
-export(monetdb.server.setup)
-export(monetdb.server.start)
-export(monetdb.server.stop)
-export(monetdbd.liststatus)
-export(monetdb.liststatus)
-export(monetdb.server.shutdown)
-export(monetdb.server.getpid)
-
-# dplyr.R
-export(src_monetdb)
-# rest of dplyr.R exported via hack in src_monetdb
diff --git a/clients/R/MonetDB.R/NEWS b/clients/R/MonetDB.R/NEWS
deleted file mode 100644
--- a/clients/R/MonetDB.R/NEWS
+++ /dev/null
@@ -1,211 +0,0 @@
-1.0.1
-- added isIdCurrent for improved compatibility with RSQLite
-- new option monetdb.log.query allows export of dbSendQuery statements to file
-- no longer depends on DBI but imports it. Preferred way of constructing
connections: library(DBI); con <- dbConnect(MonetDB.R::MonetDB(), ...)
-
-1.0.0
-- Added support for esoteric data types such as MONTH_INTERVAL (Thanks, Roman)
-- Cleaned up SQL to R type mapping (we had this twice)
-- Now creating actual R integers if data fits
-- dbWriteTable now quotes table/column names if necessary, and outputs
warnings if it did
-- New mdbapply function to automatically create and run embedded R functions
in MonetDB
-- Fixes for dplyr backend
-- Fix for case when query only returns a prompt (CALL ..., Thanks, Roman)
-- Fix for empty result set on dbGetQuery(), no longer returning NULL (Thanks,
Fabian)
-- Fix for dbConnect(), it ignored the url parameter somehow, which broke some
sqlsurvey
-- Added lower.case.names argument to monet.read.csv() in case users want to
avoid quoting (a bit)
-- Fix for dbConnect() that should be more robust to invalid connections
-- Cleaned up quoting behavior in dbListTables(), dbRemoveTable() etc.
-- Now re-establishing connection if interrupt (CMD-C or ESC) occurs
-- Fixed a bug in monetdb.read.csv for multiple CSV files without headers
-- Added transactions to monetdb.read.csv so no empty tables are left over
-- Removed nrows parameter to monetdb.read.csv
-- Added col.names argument to monetdb.read.csv
-- dplyr src_monetdb now has a con parameter to pass an existing DBI connection
-- Fixed a bug when running in a non-UTF8 locale (Thanks, Marcis)
-- Fixed a bug when dbWriteTable would not adhere to transactional semantics
-- Fixed != comparisions in dplyr (Thanks, David)
-- Support for running MonetDB in embedded mode (MonetDBLite)
-- Support for monetdblite:/some/path URLs in dbConnect()
-- Fixed an off-by-one error in type conversion (Thanks, Kirill)
-- Wait support for monetdb.server.stop on Windows
-- dbWriteTable now invokes monetdb.read.csv when called with a character
vector as value argument
-
-0.9.7
-- Fixed crash on Windows (Sorry, everyone)
-
-0.9.6
-- monetdb.read.csv new create= parameter (Thanks, Duncan)
-- deprecated nrows parameter to monetdb.read.csv, not neccessary any more
because of changes to MonetDB
-- Fixed non-ASCII character handling (Thanks, Roman)
-- Fully removed C-based socket code
-- support for dplyr verbs sample_n() and sample_frac()
-
-0.9.5
-- Removed package date (Thanks, Dimitar)
-- Added sys. schema name to internal queries, so SET SCHEMA xx would not break
things (Thanks again, Dimitar)
-- Fixed monetdb:// URL handling on newer R versions (Thanks, Alex)
-- DBI 0.3 compatibility (isValid etc.)
-- deprecated dbTransaction() (DBI has standardized dbBegin())
-- Back to R socket code for peace of mind
-- Code cleanup
-- dplyr integration moved to MonetDB.R package
-
-0.9.4
-- dbWriteTable overhaul (thanks, Anthony)
-- Fix for dbListTables for MonetDB versions after Jan2014
-
-0.9.3
-- Remove trailing slashes for monetdb.program.path parameter for
monetdb.server.setup (Thanks, Anthony!)
-- fixed monetdbd.liststatus (Thanks, Bart)
-
-0.9.2
-- monetdb_queryinfo method to find out things about an arbitrary query cheaply
-- new options monetdb.sequential, monetdb.debug.query and monetdb.debug.mapi
-- debug output now uses the message() function
-- source code cleanup
-- dbListTables() now hides system tables per default, also got options to
include the
- schema name and quoting in the result (sys_tables, schema_names and quote)
-- fixed various TODO's in the code to get closer to 1.0 (exciting)
-- fixed a bug when the error identifier sent by MonetDB was non-numeric
-- IPv6 addresses in dbConnect() should now work (another long-standing TODO)
-
-0.9.1
-- dbGetInfo() now supported on MonetDBConnection (dplyr compatibility)
-- dbTransaction(), dbCommit() and dbRollback() support
-- fixed leaking of socket variable in dbConnect()
-- fixed monetdb.server.setup for UNIX-like systems (Thanks, Enzo)
-- fixed issue in dbClearResult() which produced a protocol error
-
-0.9
-- various extensions to monetdb.read.csv
-- removed monet.frame from this package, moved to github
-
-0.8.5
-- added parameters newline and quote to monetdb.write.csv
-
-0.8.4
-- fixed bug when reading empty table (Thanks, Anthony)
-- removed assertion in mapisplit.c that triggered sometimes for unclear reasons
-
-0.8.3
-- fixed a problem where integer SEXPs turned to double somehow
-
-0.8.2
-- fixed bug in dbConnect() where port and timeout were not always integer
values
-
-0.8.1
-- fixed bug in dbWriteTable() where VARCHAR(255) was used for character data
instead of STRING
-
-0.8
-- New All-C socket code (Thanks, Windows)
-- new dbConnect() parameter organization (!)
-- new mc() shorthand method for db connections
-
-0.7.10
-- More tip-toeing around in dbConnect()
-- More error-tolerant MAPI parsing
-
-0.7.9
-- Changes in dbConnect() error handling
-
-0.7.8
-- fix for [, large offsets are not translated to SQL correctly
-
-0.7.7
-- fix for aggregatef(), formula arguments were not evaluated in the right
direction
-- support for mathematical operations on boolean columns
-
-0.7.6
-- fix for C implementation for line splitting
-
-0.7.5
-- more fetch() fixes
-
-0.7.4
-- string to line splitting to c, NA handling to C as well
-
-0.7.3
-- c implementation of very expensive function
-
-0.7.2
-- fetch() performance enhancements and bug fixes
-
-0.7.1
-- minor fixes to fetch() function from basic DBI
-
-0.7
-- some cran compatibility changes
-
-0.6.4
-- tabulate() support
-- unique() support
-- bugfix in subset()
-
-0.6.3
-- Quieter startup
-- dbSendQuery() now fails if the query is bogus
-- implemented dbGetException()
-
-0.6.2
-- subset() is back!
-
-0.6
-- merge() support from Anthony
-- CRAN cleanup
-- MonetDB control code for UNIX-like systems
-
-0.5.16
-- bugfixes in monet.frame
-
-0.5.15
-- rbind() support on monet.frame from Anthony
-
-0.5.14
-- sample() support on monet.frame
-
-0.5.13
-- bugfix in server control code from Anthony
-
-0.5.12
-- integrated formula-based aggregation from Anthony
-
-0.5.11
-- fixed a bug in aggregate() to allow count-aggregation on non-numeric columns
-
-0.5.10
-- MonetDB server control code (Windows) from Anthony Damico
-
-0.5.9
-- Increased default socket timeout to 24h. Rationale: Import jobs may take
this long, and all operations can always be cancelled with CTRL-C
-
-0.5.8
-- aggregate() support in DB
-
-0.5.5
-- Column name, type and dimension hints for monet.frame, makes it faster
-
-0.5.4
-- Initial support for sort(), head(), tail(), summary(), var(), sd(),
quantile() and median() in monet.frame
-- Changed str() implementation to not show sample data but column names/types
instead
-
-0.5
-- first release aimed at CRAN publication
-- monet.frame virtual data object
-- various bugfixes
-- documentation
-- port in monetdb:// URI now optional, defaults to 50000
-
-0.4
-- make dbColumnInfo return the R-side data type as well as the Monet-side one.
-
-0.3
-- write support in dbSendQuery, new functions dbWriteTable and dbSendUpdate
-
-0.2
-- fixed handling of boolean values, now have proper R types
-- new parameter to dbConnect to specify connection timeout
-- check for empty responses in .mapiRead, now stop()s with a warning and some
help
-
-0.1
-- initial version, basic read support
diff --git a/clients/R/MonetDB.R/R/control.R b/clients/R/MonetDB.R/R/control.R
deleted file mode 100644
--- a/clients/R/MonetDB.R/R/control.R
+++ /dev/null
@@ -1,250 +0,0 @@
-monetdb.server.start <-
- function( bat.file ){
- .Deprecated("Consider using MonetDBLite")
- if ( .Platform$OS.type == "unix" ) {
- if( !file.exists( bat.file ) ) stop( paste( bat.file , "does not exist.
Run monetdb.server.setup() to create a batch file." ) )
-
- # uugly, find path of pid file again by parsing shell script.
- sc <- utils::read.table(bat.file,sep="\n",stringsAsFactors=F)
- pidfile <- substring(sc[[2,1]],11)
-
- # run script
- system(bat.file,wait=T)
-
- # read pid from file
- pid <- scan(pidfile,what=integer(),n=1)
- return(pid)
- }
- if ( .Platform$OS.type == "windows" ) {
-
- # capture the result of a `tasklist` system call
- before.win.tasklist <- system2( 'tasklist' , stdout = TRUE )
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