Changeset: a16d65a75301 for MonetDB
URL: https://dev.monetdb.org/hg/MonetDB/rev/a16d65a75301
Modified Files:
sql/backends/monet5/vaults/sambam/sambam.c
testing/CMakeLists.txt
Branch: samloader
Log Message:
small fix for mtest htslib usage
compile fix for QNAME
disabled logging on htslib level
diffs (33 lines):
diff --git a/sql/backends/monet5/vaults/sambam/sambam.c
b/sql/backends/monet5/vaults/sambam/sambam.c
--- a/sql/backends/monet5/vaults/sambam/sambam.c
+++ b/sql/backends/monet5/vaults/sambam/sambam.c
@@ -92,6 +92,7 @@ sam_list_append(list * nameslist, char *
/* nr of sam/bam file alignment info columns */
#define SAM_NR_COLS 11
#define SAM_MAX_STR_SIZE 4096
+#define BAM_MAX_QNAME_LEN 256
#define SAM_RELATION 1
#define SAM_LOADER 2
@@ -447,6 +448,8 @@ SAMprelude(Client cntxt, MalBlkPtr mb, M
(void)pci;
fl_register("sam", &sam_relation, &sam_load);
fl_register("bam", &sam_relation, &sam_load);
+ /* disable logging on htslib level */
+ hts_verbose = HTS_LOG_OFF;
return MAL_SUCCEED;
}
diff --git a/testing/CMakeLists.txt b/testing/CMakeLists.txt
--- a/testing/CMakeLists.txt
+++ b/testing/CMakeLists.txt
@@ -91,6 +91,9 @@ endif(HAVE_GETENTROPY)
if (HAVE_OPENSSL)
set(HAVE_OPENSSL_FALSE "#")
endif(HAVE_OPENSSL)
+if (HAVE_HTSLIB)
+ set(HAVE_HTSLIB_FALSE "#")
+endif(HAVE_HTSLIB)
if (NOT WIN32)
set(NOT_WIN32_FALSE "#")
endif()
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