I think this is the right file, I pulled it from 
C:\Users\[username]\AppData\Local\Google\Chrome\User Data\Default\Bookmarks:

The "Googs" bookmark is the one I made yesterday (it has a valid id).

{
   "checksum": "f0d9f7dbdc6c35765ece2879878d19ed",
   "roots": {
      "bookmark_bar": {
         "children": [ {
            "date_added": "12864855784840114",
            "id": "0",
            "name": "Slashdot: News for nerds, stuff that matters",
            "type": "url",
            "url": "http://slashdot.org/";
         }, {
            "date_added": "12899260451774200",
            "id": "3",
            "name": "Googs",
            "type": "url",
            "url": "http://www.google.com/";
         } ],
         "date_added": "0",
         "date_modified": "12899260451774200",
         "id": "0",
         "name": "Bookmarks bar",
         "type": "folder"
      },
      "other": {
         "children": [ {
            "children": [ {
               "date_added": "12864855666376114",
               "id": "0",
               "name": "my.foxmarks.com <http://my.foxmarks.com>",
               "type": "url",
               "url": "http://my.foxmarks.com/";
            } ],
            "date_added": "12864855682500114",
            "date_modified": "12864855784840114",
            "id": "0",
            "name": "New folder",
            "type": "folder"
         } ],
         "date_added": "0",
         "date_modified": "0",
         "id": "0",
         "name": "Other bookmarks",
         "type": "folder"
      }
   },
   "version": 1
}

Erik Kay wrote:
> That's pretty troubling.  Could you look at the Bookmarks JSON file in
> your profile directory and see if the "id" value is set on these
> entries?
>
> Erik
>
>
> On Mon, Oct 5, 2009 at 5:14 PM, Colin Bleckner <[email protected]> wrote:
>   
>> Here's something odd I just ran in to.  I started up a computer that I
>> hadn't used in a month or so, updated Chrome (running on the developer
>> branch), and started testing my extension.  I was running into a whole
>> slew of problems and eventually discovered that all of the bookmarks
>> returned from chrome.bookmarks.getTree() had a bookmark id of 0!
>>
>> I'm pretty sure that the last time I ran Chrome on that machine was
>> before bookmark ids became persistent, so my hunch is that it has
>> something to with old, old bookmarks getting updated to the latest
>> version of Chrome.  Newly created bookmarks get a new (non-0) id just
>> fine, so things seem to be working correctly (and it's probably not a
>> huge deal going forward).  However, the root folder, Bookmarks bar and
>> Other bookmarks folder are all still stuck at 0.  Any ideas about how I
>> might get Chrome to reset these?
>>
>> Colin
>>
>> >>
>>
>>     

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