The key purpose of the gps is to supply the seconds for the PPS. Once it has
done that it is no longer needed. Thus you could have the gps run with pps for
a while, and then do a noselect on it using chronyc. That way chrony would
rely on the free running os the system clock to supply the seconds, and the
pps to supply the microseconds.

However it is disturbing that you are losing pps for long periods of time.
That might indicate that there is something wrong with your gps receiver. I
know I had trouble with mine that the antenna was defective.


On Mon, 2 Dec 2013, Battocchi, Scott L. wrote:

Hi All,
Sorry for the delayed response.  I have collected 36 hours of data with the 
following sources:
refclock PPS /dev/pps1 refid PPSi
refclock SHM 2 offset 0.530 delay 0.01 refid GPSi
server 1.us.pool.ntp.org minpoll 5 maxpoll 10 maxdelay 0.4 noselect
server 2.pool.ntp.org minpoll 5 maxpoll 10 maxdelay 0.4 noselect
server 3.us.pool.ntp.org minpoll 5 maxpoll 10 maxdelay 0.4 noselect

Since we will be running disconnected from real NTP servers in our application 
I had the 3 NTP servers as noselect so that I could track the GPS and PPS 
against them, but not actually use them in the selection algorithm.

Miroslav said:
If a source disappears for 8 polling intervals, chronyd will select another 
source even if it's much worse. I agree that could be improved. With NMEA 
sources it's usually better to use the noselect option or don't configure it at 
all.
Since we will not have access to a network time source and will be relying on 
GPSD/NMEA to get us in the correct ballpark on system startup, is there another 
configuration option we can try to minimize the snapping back to GPS so quickly?

The three attached plots are:
4hr_offsets:  Hours 0-4, offsets straight from statistics.log
4hr_offsets_PPSadjusted:  Hours 0-4, adjusted offsets assuming PPS was always 0 
and using the most recent PPS value to adjust the actual offset in 
statistics.log
Syncsource_PPSadjusted:   Hours 2-4, same data as PPSadjusted but with 
background highlighted according to active sync source from tracking.log

Looking through the refclocks.log it seems as though even with both PPS and GPS 
present and having samples filtered, often after a GPS filtered entry in the 
log PPS samples would be dropped completely until one or more subsequent GPS 
filtered entries.
{14 GPSi samples and 14 PPSi samples}
2013-11-27 23:08:38.999883 PPSi   15 N 1  2.455370e-04  1.161940e-04  2.265e-04
2013-11-27 23:08:36.999489 PPSi    - N -       -        5.107210e-04  1.854e-04
2013-11-27 23:08:39.600949 GPSi   15 N 0 -6.007421e-01 -7.094921e-02  2.206e-02
2013-11-27 23:08:33.249250 GPSi    - N -       -       -1.925024e-02  6.892e-03
{14 GPSi samples, NO PPSi samples}
2013-11-27 23:08:55.532367 GPSi   15 N 0 -5.323654e-01 -2.367523e-03  2.179e-02
2013-11-27 23:08:46.365687 GPSi    - N -       -       -3.568759e-02  7.070e-03
{14 GPSi samples, NO PPSi samples}
2013-11-27 23:09:43.590657 GPSi   15 N 0 -5.906571e-01 -6.065711e-02  2.146e-02
2013-11-27 23:09:37.901101 GPSi    - N -       -       -7.110153e-02  6.716e-03
{14 GPSi samples, NO PPSi samples}
2013-11-27 23:10:00.489102 GPSi   15 N 0 -4.891029e-01  4.089708e-02  2.124e-02
2013-11-27 23:09:52.357123 GPSi    - N -       -       -2.712306e-02  6.472e-03
2013-11-27 23:10:00.000461 PPSi    0 N 1 -5.952060e-04 -4.616970e-04  1.896e-04
2013-11-27 23:10:01.561675 GPSi    0 N 0 -5.618044e-01 -3.167506e-02  2.047e-02
{14 GPSi samples, 14 PPSi samples for 3 more rounds, before dropping PPS 
samples again}

I have the full console output as well with debugging enabled and am trying to 
figure out how best to parse and analyze it.  One thing I notices in comparison 
to my previous run is that all of the ignored PPS samples are coming from line 
465 in refclock.c:
refclock.c:465:(RCL_AddPulse)[28-14:20:00] refclock pulse ignored 
second=0.999999657 sync=0 dist=1.500000000


and not line 440 like they were on the previous run:
refclock.c:440:(RCL_AddPulse)[26-18:03:56] refclock pulse ignored 
offdiff=-0.313099609 refdisp=0.041061551 disp=0.022734546

Thanks,
Scott

-----Original Message-----
From: Bill Unruh [mailto:un...@physics.ubc.ca]
Sent: Friday, November 29, 2013 11:48 AM
To: chrony-users@chrony.tuxfamily.org
Subject: Re: [chrony-users] kernel PPS troubleshooting

On Fri, 29 Nov 2013, Miroslav Lichvar wrote:

On Fri, Nov 29, 2013 at 09:46:32AM -0800, Bill Unruh wrote:
On Fri, 29 Nov 2013, Bill Unruh wrote:
By the way, does the kernel PPS do median filtering before passing on
the times to chrony? (Ie, taking the median of say the past 16 inputs
and throwing away the 6 worst outliers and then retaking the median?)

The kernel doesn't filter the PPS samples in any way. In chronyd the
PPS driver fetches the latest PPS sample from the kernel once per
second and the refclock poll (16 seconds by default) runs the median
filter.

Ah. OK.


Anyway, it should not be switching sources unless the deviation of
the selected source exceeds the variance of the alternative (or
unless the source has disappeared for a suitable number of poll
intervals, probably related to how long one would expect to wait for
the drift rate variance to make the system clock deviate by more than
the second source's variance. Ie, you are far better off letting a
clock drift unconstrained for a while than to jump to source which has a huge 
(factors of a 1000) worse variance.

The selection algorithm prefers sources with shortest distance (with
refclock that's the measured dispersion + configured delay). If there
are more sources with similar distance they will be combined together.

If a source disappears for 8 polling intervals, chronyd will select
another source even if it's much worse. I agree that could be
improved. With NMEA sources it's usually better to use the noselect
option or don't configure it at all.

It looks in the source code as if it grabs a new source as soon as the source 
disappears, but that was really not a very good look I had at the code.

If only only had nmea and pps, one needs the nmea at least at start up to get 
the time to within a half second or so, but thereafter of course it probably 
should not be used unless the PPS disappears for quite a while ( in which case 
the nmea is liable to be not very good either)

Certainly it would be good to find out what was happening with his clock 
hopping.





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