Hi,
These kind of transformations of Cil are quite invasive. We have added support 
for ACSL annotations in Frama-C which is based on Cil. You can download the 
latest version from Frama-c.com and have a look in cil/src/* to understand how 
we did it. 
Regards,

Benjamin Monate
CEA LIST
Head of Software Safety Laboratory
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