So, I looked into mainmenu.C and there I can see
(searching for ClearKeyframes)
 

int ClearKeyframes::handle_event()
{
 if( mwindow->session->current_operation == NO_OPERATION )
  mwindow->clear_automation();
 return 1;
}

and for "keyframes_follow_edits"
I see

keyframes_follow_edits->set_checked(mwindow->edl->session->autos_follow_edits);

so, may be save this state into tmp variable,  test this 
mwindow->edl->session->autos_follow_edits , 
and if set to 1 - clear temporarily before calling mwindow->clear_automation(); 
and restore
from tmp variable afterwards?

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