This was posted to the SPSS list. Much data mining can be done with SPSS but this post seems to imply the use of another program.

In any case this looks like it could be an interesting exploratory (data mining) study so I am sending it on.  Please reply to the original sender not to me.

Art Kendall


-------- Original Message --------
Subject: [SPSSX-L] e-LICO multi-omics prediction challenge with background knowledge on Obstructive Nephropathy
Date: Wed, 15 Sep 2010 16:37:35 -0400
From: Adam Woznica <[email protected]>
Reply-To: Adam Woznica <[email protected]>
To: [email protected]


Dear all,

We present a biological data-mining problem that poses a number of
significant challenges; the available data: (i) are of high dimensionality
but of extremely small sample size, (ii) come from different sources which
correspond to different biological levels, (iii) exhibit a high degree of
feature dependencies and interactions within and between the different
sources; some of the interactions between the different sources are known
and available as background knowledge, and (iv) are incomplete.

This data was obtained from patients with Obstructive Nephropathy (ON) which
is the most frequent nephropathy observed among newborns and children, and
the first cause of end stage renal disease usually treated by dialysis or
transplantation. The goal is to construct diagnostic models that accurately
connect the biological levels to the severity of the pathology. We
particularly welcome data mining approaches and learning methods that are
able to accommodate the available background information in order to address
the formidable challenge of high dimensionality small sample size of our
setting and deliver better models.

A prize is envisaged for the top performing approaches (2500EU in total).
The price is sponsored by Rapid-I the company that supports RapidMiner,
probably the most popular open-source data mining environment, and the
European Commission through the e-Lico EU project. Participants are expected
to prepare a paper, maximum 8 pages, describing their approach. We plan to
have a number of selected papers considered for publication in a special
issue of a journal (to be announced soon).

Challenge web page: http://tunedit.org/challenge/ON .

Started: Sep 15, 2010
Ends: Dec 19, 2010

Organizing Committee:
- Alexandros Kalousis, University of Geneva, Switzerland
- Julie Klein, Inserm U858, Toulouse, France
- Joost Schanstra, Inserm U858, Toulouse, France
- Adam Woznica, University of Geneva, Switzerland

Regards,
Adam Woznica

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