I want to use a program as a firewall for Iptables.
Is it OK to run a program as a GUI as root to do this, or would there be 
problems with this?

I was using Guarddog to do this as a normal user and it gave me this message: 

Since you do not have superuser privileges, Guarddog is running with
reduced functionality. Firewall scripts may be Imported/Exported, but
the system's firewall settings may not be changed.Since you do not have 
superuser privileges, Guarddog is running with
reduced functionality. Firewall scripts may be Imported/Exported, but
the system's firewall settings may not be changed.

Some other ones I was looking at are fwbuilder, firehol. Are these better 
choices?

Thanks for any help.


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