I have committed a patch to Cocoon 2.1 that allows us to use
to specify a file with URIs to process in it.  The format of
the file is simple: 1 uri per line.  It is invoked in the
following manner:

run -f uris.txt

The uri files are additive.  That means you can add additional
uris to process on the command line (I have not tested multiple
'-f' parameters).

[VOTE]
Since this does not affect existing functionality of Cocoon in
any way, and it merely adds a nice useability feature (esp. for
using Cocoon to build docs), I propose to include the additional
command line parameter to Cocoon 2.0.

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