Author: plessy Date: 2012-04-18 01:30:09 +0000 (Wed, 18 Apr 2012) New Revision: 2224
Modified: packages-metadata/c/cpanminus.copyright packages-metadata/e/edfbrowser.copyright packages-metadata/g/gwyddion.upstream packages-metadata/k/kalign.upstream packages-metadata/l/liblivemedia.copyright packages-metadata/l/libplack-perl.copyright packages-metadata/l/libpoe-component-client-keepalive-perl.copyright packages-metadata/r/r-bioc-limma.copyright packages-metadata/r/rasmol.upstream packages-metadata/s/shared-desktop-ontologies.copyright packages-metadata/t/tophat.copyright Log: Upload-driven and CRON-driven updates. Modified: packages-metadata/c/cpanminus.copyright =================================================================== --- packages-metadata/c/cpanminus.copyright 2012-04-11 23:29:10 UTC (rev 2223) +++ packages-metadata/c/cpanminus.copyright 2012-04-18 01:30:09 UTC (rev 2224) @@ -23,7 +23,7 @@ License: Artistic or GPL-1+ Files: debian/* -Copyright: 2011, Alessandro Ghedini <[email protected]> +Copyright: 2011, Alessandro Ghedini <[email protected]> License: Artistic or GPL-1+ License: Artistic Modified: packages-metadata/e/edfbrowser.copyright =================================================================== --- packages-metadata/e/edfbrowser.copyright 2012-04-11 23:29:10 UTC (rev 2223) +++ packages-metadata/e/edfbrowser.copyright 2012-04-18 01:30:09 UTC (rev 2224) @@ -1,37 +1,86 @@ -Format-Specification: http://svn.debian.org/wsvn/dep/web/deps/dep5.mdwn?op=file&rev=135 -Name: edfbrowser -Maintainer: Teunis van Beelen <[email protected]> +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: edfbrowser +Upstream-Contact: Teunis van Beelen <[email protected]> Source: http://www.teuniz.net/edfbrowser/ - Files: * -Copyright: 2007,2008,2009 Teunis van Beelen <[email protected]> +Copyright: 2007 - 2012 Teunis van Beelen <[email protected]> License: GPL-2 This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation version 2 of the License. - + . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. - . + . You should have received a copy of the GNU General Public License along with this package; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA - . + . On Debian systems, the full text of the GNU General Public License version 2 can be found in the file `/usr/share/common-licenses/GPL-2'. +Files: third_party/fidlib/* +Copyright: 2002-2004 Jim Peters <http://uazu.net/> +License: LGPL-2.1 + This library is free software; you can redistribute it and/or + modify it under the terms of the GNU Lesser General Public + License as published by the Free Software Foundation; either + version 2.1 of the License, or (at your option) any later version. + . + This library is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + Lesser General Public License for more details. + . + You should have received a copy of the GNU Lesser General Public + License along with this library; if not, write to the Free Software + Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA + . + On Debian systems, the full text of the GNU Lesser General Public + License version 2.1 can be found in the file + `/usr/share/common-licenses/LGPL-2.1'. + +Files: third_party/kiss_fft/* +Copyright: 2003-2010, Mark Borgerding +License: BSD-like + Redistribution and use in source and binary forms, with or without + modification, are permitted provided th at the following conditions are + met: + . + * Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + * Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + * Neither the author nor the names of any contributors may be used to + endorse or promote products derived from this software without specific + prior written permission. + . + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS + IS" AND ANY EXPRESS OR IMPLIED WAR RANTIES, INCLUDING, BUT NOT LIMITED + TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTIC + ULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR + CONTRIBUTORS BE LIABLE FOR ANY DIREC T, INDIRECT, INCIDENTAL, SPECIAL, + EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROC + UREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; + OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, + WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENC E OR + OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF + ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + Files: debian/* -Copyright: 2009,2010 Bas Zoetekouw <[email protected]> +Copyright: 2009-2010 Bas Zoetekouw <[email protected]> + 2011-2012 Andreas Tille <[email protected]> License: ISC Permission to use, copy, modify, and/or distribute this software for any purpose with or without fee is hereby granted, provided that the above copyright notice and this permission notice appear in all copies. - . + . THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE @@ -40,3 +89,4 @@ OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE. + Modified: packages-metadata/g/gwyddion.upstream =================================================================== --- packages-metadata/g/gwyddion.upstream 2012-04-11 23:29:10 UTC (rev 2223) +++ packages-metadata/g/gwyddion.upstream 2012-04-18 01:30:09 UTC (rev 2224) @@ -8,7 +8,7 @@ ISSN: 1895-1082 Pages: 181-188 Volume: 10 - Issue: 1 + Number: 1 Year: 2012 DOI: 10.2478/s11534-011-0096-2 URL: http://www.springerlink.com/content/21716522802h0404/ Modified: packages-metadata/k/kalign.upstream =================================================================== --- packages-metadata/k/kalign.upstream 2012-04-11 23:29:10 UTC (rev 2223) +++ packages-metadata/k/kalign.upstream 2012-04-18 01:30:09 UTC (rev 2224) @@ -12,7 +12,7 @@ DOI: 10.1093/nar/gkn1006 PMID: 19103665 URL: http://nar.oxfordjournals.org/cgi/content/abstract/37/3/858 - - Authors: Lassmann, Timo and Sonnhammer, Erik L. L. + - Author: Lassmann, Timo and Sonnhammer, Erik L. L. Title: Kalign--an accurate and fast multiple sequence alignment algorithm Journal: BMC Bioinformatics Volume: 6 Modified: packages-metadata/l/liblivemedia.copyright =================================================================== --- packages-metadata/l/liblivemedia.copyright 2012-04-11 23:29:10 UTC (rev 2223) +++ packages-metadata/l/liblivemedia.copyright 2012-04-18 01:30:09 UTC (rev 2224) @@ -1,28 +1,31 @@ -This package was initially debianized by Sam Hocevar <[email protected]> on -Mon, 9 Feb 2004 22:31:50 +0100. +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: LIVE555 Streaming Media +Upstream-Contact: [email protected] +Source: http://live555.com/liveMedia/public/ -This package is maintained since 2008 by Christophe Mutricy -<[email protected]> +Files: * +Copyright: 1996-2012 Live Networks, Inc. All rights reserved. +License: LGPL-2.1+ -It was downloaded from http://www.live555.com/liveMedia/public/ +Files: debian/* +Copyright: + 2012 Alessio Treglia <[email protected]> + 2008 Christophe Mutricy <[email protected]> +License: LGPL-2.1+ -Upstream Authors: Live Networks, Inc. <http://www.live.com/> - -Copyright (c) 1996-2012 Live Networks, Inc. All rights reserved. - - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 2.1 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library; if not, write to the Free Software - Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA - -On Debian GNU/Linux systems, the complete text of the GNU Lesser General -Public License can be found in `/usr/share/common-licenses/LGPL-2.1'. +License: LGPL-2.1+ + This library is free software; you can redistribute it and/or + modify it under the terms of the GNU Lesser General Public + License as published by the Free Software Foundation; either + version 2.1 of the License, or (at your option) any later version. + . + This library is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + Lesser General Public License for more details. +Comment: + On Debian GNU/Linux systems, the complete text of the GNU Lesser General + Public License can be found in `/usr/share/common-licenses/LGPL-2.1'. + . + You should have received a copy of the GNU Lesser General Public License + along with this library. If not, see <http://www.gnu.org/licenses/>. Modified: packages-metadata/l/libplack-perl.copyright =================================================================== --- packages-metadata/l/libplack-perl.copyright 2012-04-11 23:29:10 UTC (rev 2223) +++ packages-metadata/l/libplack-perl.copyright 2012-04-18 01:30:09 UTC (rev 2224) @@ -18,7 +18,7 @@ 2010-2011, Krzysztof Krzyżaniak (eloy) <[email protected]> 2010-2011, gregor herrmann <[email protected]> 2010, Iñigo Tejedor Arrondo <[email protected]> - 2012, Alessandro Ghedini <[email protected]> + 2012, Alessandro Ghedini <[email protected]> License: Artistic or GPL-1+ License: Artistic Modified: packages-metadata/l/libpoe-component-client-keepalive-perl.copyright =================================================================== --- packages-metadata/l/libpoe-component-client-keepalive-perl.copyright 2012-04-11 23:29:10 UTC (rev 2223) +++ packages-metadata/l/libpoe-component-client-keepalive-perl.copyright 2012-04-18 01:30:09 UTC (rev 2224) @@ -13,6 +13,7 @@ 2008, Ernesto Hernández-Novich (USB) <[email protected]> 2008, Roberto C. Sanchez <[email protected]> 2009-2011, Jonathan Yu <[email protected]> + 2012, Florian Schlichting <[email protected]> License: Artistic or GPL-1+ License: Artistic Modified: packages-metadata/r/r-bioc-limma.copyright =================================================================== --- packages-metadata/r/r-bioc-limma.copyright 2012-04-11 23:29:10 UTC (rev 2223) +++ packages-metadata/r/r-bioc-limma.copyright 2012-04-18 01:30:09 UTC (rev 2224) @@ -1,8 +1,13 @@ Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ -Source: http://www.bioconductor.org/packages/2.9/bioc/src/contrib/limma_3.10.3.tar.gz +Source: http://www.bioconductor.org/packages/release/bioc/src/contrib/limma_3.12.0.tar.gz inst/doc/usersguide.pdf is not accompanied by its source, and therefore removed in the “dfsg” version. +Comment: licensing discussed on https://stat.ethz.ch/pipermail/bioc-devel/2011-May/002620.html +License: GPL-2 + LIMMA combines LGPL-2+ and GPL-2+ code, and depends on R (GPL-2) and the GNU C + library (LGPL-2.1+). Taken as a whole, its license is effectively GPL-2, plus + perhaps some additional BSD-like requirements depending on what it uses from + the GNU C library. Removed: inst/doc/usersguide.pdf -Comment: licensing discussed on https://stat.ethz.ch/pipermail/bioc-devel/2011-May/002620.html Files: * Copyright: Gordon Smyth <[email protected]> Modified: packages-metadata/r/rasmol.upstream =================================================================== --- packages-metadata/r/rasmol.upstream 2012-04-11 23:29:10 UTC (rev 2223) +++ packages-metadata/r/rasmol.upstream 2012-04-18 01:30:09 UTC (rev 2224) @@ -2,7 +2,7 @@ Name: RasMol Reference: author: Roger Sayle and E. James Milner-White - title: RasMol: Biomolecular graphics for all + title: "RasMol: Biomolecular graphics for all" journal: Trends in Biochemical Sciences (TIBS) volume: 20 number: 9 Modified: packages-metadata/s/shared-desktop-ontologies.copyright =================================================================== --- packages-metadata/s/shared-desktop-ontologies.copyright 2012-04-11 23:29:10 UTC (rev 2223) +++ packages-metadata/s/shared-desktop-ontologies.copyright 2012-04-18 01:30:09 UTC (rev 2224) @@ -1,4 +1,4 @@ -Format: http://svn.debian.org/wsvn/dep/web/deps/dep5.mdwn?op=file&rev=174 +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: shared-desktop-ontologies Upstream-Contact: Evgeny Egorochkin <[email protected]> Leo Sauermann <[email protected]> Modified: packages-metadata/t/tophat.copyright =================================================================== --- packages-metadata/t/tophat.copyright 2012-04-11 23:29:10 UTC (rev 2223) +++ packages-metadata/t/tophat.copyright 2012-04-18 01:30:09 UTC (rev 2224) @@ -1,7 +1,7 @@ -Format: http://dep.debian.net/deps/dep5 +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: TopHat Upstream-Contact: Cole Trapnell <[email protected]> -Source: http://tophat.cbcb.umd.edu/downloads/tophat-1.4.1.tar.gz +Source: http://tophat.cbcb.umd.edu/downloads/tophat-2.0.0.tar.gz Comment: Cole Trapnell wrote TopHat. TopHat is built on Bowtie, which was written by Ben Langmead and Cole Trapnell. Daehwan Kim and Geo Pertea added support @@ -13,37 +13,6 @@ Copyright: © 2003-2010 Cole Trapnell et al License: Artistic -Files: src/SeqAn-1.2/* -Upstream-Name: SeqAn -Copyright: © 2007 -License: LGPL-3+ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3 of the License, or (at your option) any later version. - . - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - . - On Debian systems, the complete text of the GNU Lesser General Public License - version 3 can be found in the files ‘/usr/share/common-licenses/LGPL-3’ and - ‘/usr/share/common-licenses/GPL-3’. - -Files: src/SeqAn-1.2/index_sa_lss.h -Copyright: © 1999, N. Jesper Larsson, all rights reserved. -License: qsufsort.c - This file contains an implementation of the algorithm presented in "Faster - Suffix Sorting" by N. Jesper Larsson ([email protected]) and Kunihiko - Sadakane ([email protected]). - . - This software may be used freely for any purpose. However, when distributed, - the original source must be clearly stated, and, when the source code is - distributed, the copyright notice must be retained and any alterations in - the code must be clearly marked. No warranty is given regarding the quality - of this software. - Files: ax_bam.m4 Copyright: © 2010 Cole Trapnell <[email protected]> License: GAP _______________________________________________ Collab-qa-commits mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/collab-qa-commits
