Author: plessy Date: 2012-04-26 03:00:30 +0000 (Thu, 26 Apr 2012) New Revision: 2244
Added: packages-metadata/a/amap-align.upstream packages-metadata/p/pymvpa.upstream Modified: packages-metadata/a/altree.upstream packages-metadata/e/exonerate.upstream packages-metadata/k/kalign.upstream packages-metadata/m/maq.copyright packages-metadata/p/pymvpa.copyright packages-metadata/s/seqan.upstream Log: Daily automatic umegaya push Modified: packages-metadata/a/altree.upstream =================================================================== --- packages-metadata/a/altree.upstream 2012-04-25 09:08:49 UTC (rev 2243) +++ packages-metadata/a/altree.upstream 2012-04-26 03:00:30 UTC (rev 2244) @@ -11,6 +11,7 @@ Title: > ALTree: association detection and localization of susceptibility sites using haplotype phylogenetic trees URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/22/11/1402 + eprint: http://bioinformatics.oxfordjournals.org/cgi/reprint/22/11/1402.pdf Volume: 22 Year: 2006 Watch: http://claire.bardel.free.fr/files/altree-([[:digit:]].*)\.tar\.gz Added: packages-metadata/a/amap-align.upstream =================================================================== --- packages-metadata/a/amap-align.upstream (rev 0) +++ packages-metadata/a/amap-align.upstream 2012-04-26 03:00:30 UTC (rev 2244) @@ -0,0 +1,11 @@ +Reference: + Author: Ariel S. Schwartz and Lior Pachter + Title: Multiple alignment by sequence annealing + Journal: Bioinformatics + Year: 2007 + Volume: 23 + Number: 2 + Pages: e24-e29 + DOI: 10.1093/bioinformatics/btl311 + URL: http://bioinformatics.oxfordjournals.org/content/23/2/e24 + eprint: http://bioinformatics.oxfordjournals.org/content/23/2/e24.full.pdf+html Modified: packages-metadata/e/exonerate.upstream =================================================================== --- packages-metadata/e/exonerate.upstream 2012-04-25 09:08:49 UTC (rev 2243) +++ packages-metadata/e/exonerate.upstream 2012-04-26 03:00:30 UTC (rev 2244) @@ -12,5 +12,6 @@ DOI: 10.1186/1471-2105-6-31 PMID: 15713233 URL: http://www.biomedcentral.com/1471-2105/6/31 + eprint: http://www.biomedcentral.com/content/pdf/1471-2105-6-31.pdf ISSN: 1471-2105 Watch: http://www.ebi.ac.uk/~guy/exonerate/exonerate-([0-9.]*)\.tar\.gz Modified: packages-metadata/k/kalign.upstream =================================================================== --- packages-metadata/k/kalign.upstream 2012-04-25 09:08:49 UTC (rev 2243) +++ packages-metadata/k/kalign.upstream 2012-04-26 03:00:30 UTC (rev 2244) @@ -12,8 +12,9 @@ DOI: 10.1093/nar/gkn1006 PMID: 19103665 URL: http://nar.oxfordjournals.org/cgi/content/abstract/37/3/858 + eprint: http://nar.oxfordjournals.org/cgi/reprint/37/3/858.pdf - Author: Lassmann, Timo and Sonnhammer, Erik L. L. - Title: Kalign--an accurate and fast multiple sequence alignment algorithm + Title: Kalign - an accurate and fast multiple sequence alignment algorithm Journal: BMC Bioinformatics Volume: 6 Number: 1 @@ -23,4 +24,5 @@ PMID: 16343337 URL: http://www.biomedcentral.com/1471-2105/6/298 eprint: http://www.biomedcentral.com/content/pdf/1471-2105-6-298.pdf + ISSN: 1471-2105 Watch: NA Modified: packages-metadata/m/maq.copyright =================================================================== --- packages-metadata/m/maq.copyright 2012-04-25 09:08:49 UTC (rev 2243) +++ packages-metadata/m/maq.copyright 2012-04-26 03:00:30 UTC (rev 2244) @@ -1,4 +1,4 @@ -Format: http://dep.debian.net/deps/dep5/ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Source: http://downloads.sourceforge.net/maq/maq-0.7.1.tar.bz2 Files: * @@ -43,3 +43,4 @@ Andreas Tille <[email protected]> License: same-as-upstream Same as Maq itelf (see above). + Modified: packages-metadata/p/pymvpa.copyright =================================================================== --- packages-metadata/p/pymvpa.copyright 2012-04-25 09:08:49 UTC (rev 2243) +++ packages-metadata/p/pymvpa.copyright 2012-04-26 03:00:30 UTC (rev 2244) @@ -1,50 +1,16 @@ -Format-Specification: http://svn.debian.org/wsvn/dep/web/deps/dep5.mdwn?op=file&rev=135 -Name: PyMVPA -Source: http://www.pymvpa.org - http://github.com/PyMVPA/PyMVPA -X-References-bib: - @Article{ pymvpa, - author = "Michael Hanke and Yaroslav O. Halchenko and - Per B. Sederberg and Emanuele Olivetti and Ingo Fründ and - Jochem W. Rieger and Christoph S. Herrmann and James V. Haxby - and Stephen José Hanson and Stefan Pollmann", - title = "{PyMVPA}: A Unifying Approach to the Analysis of Neuroscientific Data", - journal = "Frontiers in Neuroinformatics", - year = "2009", - volume = "3", - number = "3", - doi = "10.3389/neuro.11.003.2009", - url = "http://dx.doi.org/10.3389/neuro.11.003.2009";, - note = "PMC2638552" - } +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0 +Upstream-Name: PyMVPA +Upstream-Contact: [email protected] +Source: http://github.com/PyMVPA/PyMVPA - Files: * Copyright: - 2006-2010, Michael Hanke <[email protected]> - 2007-2010, Yaroslav Halchenko <[email protected]> + 2006-2012, Michael Hanke <[email protected]> + 2007-2012, Yaroslav Halchenko <[email protected]> 2007-2009, Per B. Sederberg <[email protected]> 2008, Emanuele Olivetti <[email protected]> License: Expat - Permission is hereby granted, free of charge, to any person obtaining a copy - of this software and associated documentation files (the "Software"), to deal - in the Software without restriction, including without limitation the rights - to use, copy, modify, merge, publish, distribute, sublicense, and/or sell - copies of the Software, and to permit persons to whom the Software is - furnished to do so, subject to the following conditions: - . - The above copyright notice and this permission notice shall be included in - all copies or substantial portions of the Software. - . - THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR - IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, - FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE - AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER - LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, - OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN - THE SOFTWARE. - Files: debian/* Copyright: Copyright 2006-2010, Michael Hanke <[email protected]> @@ -98,3 +64,23 @@ License: GPL-2 On Debian GNU/Linux systems, the complete text of the GPL-2 License can be found in `/usr/share/common-licenses/GPL-2'. + + +License: Expat + Permission is hereby granted, free of charge, to any person obtaining a copy + of this software and associated documentation files (the "Software"), to deal + in the Software without restriction, including without limitation the rights + to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + copies of the Software, and to permit persons to whom the Software is + furnished to do so, subject to the following conditions: + . + The above copyright notice and this permission notice shall be included in + all copies or substantial portions of the Software. + . + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + THE SOFTWARE. Added: packages-metadata/p/pymvpa.upstream =================================================================== --- packages-metadata/p/pymvpa.upstream (rev 0) +++ packages-metadata/p/pymvpa.upstream 2012-04-26 03:00:30 UTC (rev 2244) @@ -0,0 +1,12 @@ +Name: pymvpa +Reference: + - Author: Michael Hanke and Yaroslav O. Halchenko and Per B. Sederberg and Stephen Jos{\'e} Hanson and James V. Haxby and Stefan Pollmann + Title: 'PyMVPA: A Python toolbox for multivariate pattern analysis of fMRI data' + Journal: Neuroinformatics + Volume: 7 + Number: 1 + Pages: 37--53 + Year: 2009 + URL: http://dx.doi.org/10.1007/s12021-008-9041-y + DOI: 10.1007/s12021-008-9041-y + PMID: 19184561 Modified: packages-metadata/s/seqan.upstream =================================================================== --- packages-metadata/s/seqan.upstream 2012-04-25 09:08:49 UTC (rev 2243) +++ packages-metadata/s/seqan.upstream 2012-04-26 03:00:30 UTC (rev 2244) @@ -1,9 +1,7 @@ Contact: SeqAn Team (http://www.seqan.de/contact-us.html) -Reference-DOI: 10.1186/1471-2105-9-11 Donate: http://www.seqan.de/ Homepage: http://www.seqan.de/ Name: SeqAn -Reference-PMID: 18184432 Reference: AUTHOR: Doring, Andreas and Weese, David and Rausch, Tobias and Reinert, Knut TITLE: SeqAn An efficient, generic C++ library for sequence analysis @@ -12,7 +10,10 @@ YEAR: 2008 NUMBER: 1 PAGES: 11 + DOI: 10.1186/1471-2105-9-11 + PMID: 18184432 URL: http://www.biomedcentral.com/1471-2105/9/11 + eprint: http://www.biomedcentral.com/content/pdf/1471-2105-9-11.pdf ISSN: 1471-2105 Watch: | http://www.seqan.de/downloads/releases.html \ _______________________________________________ Collab-qa-commits mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/collab-qa-commits
