Author: plessy
Date: 2012-05-06 03:00:31 +0000 (Sun, 06 May 2012)
New Revision: 2262

Added:
   packages-metadata/m/muscle.upstream
   packages-metadata/p/psicode.upstream
Modified:
   packages-metadata/m/mipe.upstream
   packages-metadata/p/pixelmed.copyright
Log:
Daily automatic umegaya push

Modified: packages-metadata/m/mipe.upstream
===================================================================
--- packages-metadata/m/mipe.upstream   2012-05-05 16:22:07 UTC (rev 2261)
+++ packages-metadata/m/mipe.upstream   2012-05-06 03:00:31 UTC (rev 2262)
@@ -2,7 +2,7 @@
 Contact: Jan Aerts (aerts at users.sourceforge.net)
 Homepage: http://mipe.sourceforge.net
 Reference:
- Author: Aerts J & Veenendaal T.
+ Author: Jan Aerts and T. Veenendaal
  Title: MIPE - a XML-format to facilitate the storage and exchange of 
PCR-related data
  Journal: Online Journal of Bioinformatics
  Number: 2

Added: packages-metadata/m/muscle.upstream
===================================================================
--- packages-metadata/m/muscle.upstream                         (rev 0)
+++ packages-metadata/m/muscle.upstream 2012-05-06 03:00:31 UTC (rev 2262)
@@ -0,0 +1,23 @@
+Reference:
+ - Author: Robert C. Edgar
+   Title: "MUSCLE: multiple sequence alignment with high accuracy and high 
throughput"
+   Journal: Nucleic Acids Research
+   Year: 2004
+   Volume: 32
+   Number: 5
+   Pages: 1792-1797
+   DOI: 10.1093/nar/gkh340
+   PMID: 15034147
+   URL: http://nar.oxfordjournals.org/content/32/5/1792
+   eprint: http://nar.oxfordjournals.org/content/32/5/1792.full.pdf+html
+ - Author: Robert C. Edgar
+   Title: "MUSCLE: a multiple sequence alignment method with reduced time and 
space complexity"
+   Journal: BMC Bioinformatics
+   Year: 2004
+   Volume: 19
+   Number: 5
+   Pages: 113
+   DOI: 10.1186/1471-2105-5-113
+   PMID: 15318951
+   URL: http://www.biomedcentral.com/1471-2105/5/113
+   eprint: http://www.biomedcentral.com/content/pdf/1471-2105-5-113.pdf

Modified: packages-metadata/p/pixelmed.copyright
===================================================================
--- packages-metadata/p/pixelmed.copyright      2012-05-05 16:22:07 UTC (rev 
2261)
+++ packages-metadata/p/pixelmed.copyright      2012-05-06 03:00:31 UTC (rev 
2262)
@@ -1,25 +1,24 @@
-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
-Debianized-By: Mathieu Malaterre <[email protected]>
-Debianized-Date: Sat, 21 Nov 2009 22:30:57 +0100
-Original-Source: http://www.pixelmed.com/
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: PixelMed Java DICOM Toolkit
+Upstream-Contact: [email protected]
+Source: http://www.pixelmed.com/
 
 Files: *
-Copyright:
- Copyright (c) 2001-2008, David A. Clunie DBA PixelMed Publishing. All rights 
reserved.
-License:
+Copyright: 2001-2008, David A. Clunie DBA PixelMed Publishing. All rights 
reserved.
+License: BSD
  Redistribution and use in source and binary forms, with or without 
modification, are
  permitted provided that the following conditions are met:
- 
+ .
  1. Redistributions of source code must retain the above copyright notice, 
this list of
     conditions and the following disclaimers.
- 
+ .
  2. Redistributions in binary form must reproduce the above copyright notice, 
this list of
     conditions and the following disclaimers in the documentation and/or other 
materials
     provided with the distribution.
- 
+ .
  3. Neither the name of PixelMed Publishing nor the names of its contributors 
may
     be used to endorse or promote products derived from this software.
- 
+ .
  This software is provided by the copyright holders and contributors "as is" 
and any
  express or implied warranties, including, but not limited to, the implied 
warranties
  of merchantability and fitness for a particular purpose are disclaimed. In no 
event
@@ -29,14 +28,13 @@
  however caused and on any theory of liability, whether in contract, strict 
liability, or
  tort (including negligence or otherwise) arising in any way out of the use of 
this software,
  even if advised of the possibility of such damage.
- 
+ .
  This software has neither been tested nor approved for clinical use or for 
incorporation in
  a medical device. It is the redistributor's or user's responsibility to 
comply with any
  applicable local, state, national or international regulations.
 
 Files: debian/*
 Copyright:
- Copyright 2009, Mathieu Malaterre <[email protected]>
-License: GPL-2+
- The Debian packaging is licensed under the GPL-2 or any later version,
- see `/usr/share/common-licenses/GPL-2'
+ Copyright 2009-2012, Mathieu Malaterre <[email protected]>
+License: BSD
+ Same as above

Added: packages-metadata/p/psicode.upstream
===================================================================
--- packages-metadata/p/psicode.upstream                                (rev 0)
+++ packages-metadata/p/psicode.upstream        2012-05-06 03:00:31 UTC (rev 
2262)
@@ -0,0 +1,18 @@
+Name: PSI3
+Reference:
+ - Author: T. Daniel Crawford and C. David Sherrill and Edward F. Valeev and 
Justin T. Fermann and Rollin A. King and Matthew L. Leininger and Shawn T. 
Brown and Curtis L. Janssen and Edward T. Seidl and Joseph P. Kenny and Wesley 
D. Allen
+   Title: "PSI3: An open-source Ab Initio electronic structure package"
+   Journal: J. Comp. Chem.
+   Year: 2007
+   Volume: 28
+   Number: 9
+   Pages: 1610-1616
+   URL: http://onlinelibrary.wiley.com/doi/10.1002/jcc.20573/abstract
+   eprint: 
http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.108.5683&rep=rep1&type=pdf
+   DOI: 10.1002/jcc.20573
+ - Author: Justin M. Turney and Andrew C. Simmonett and Robert M. Parrish and 
Edward G. Hohenstein and Francesco A. Evangelista and Justin T. Fermann and 
Benjamin J. Mintz and Lori A. Burns and Jeremiah J. Wilke and Micah L. Abrams 
and Nicholas J. Russ and Matthew L. Leininger and Curtis L. Janssen and Edward 
T. Seidl and Wesley D. Allen and Henry F. Schaefer and Rollin A. King and 
Edward F. Valeev and C. David Sherrill and T. Daniel Crawford
+   Title: "Psi4: an open-source ab initio electronic structure program"
+   Journal: WIREs Comput. Mol. Sci.
+   Year: 2011
+   URL: http://onlinelibrary.wiley.com/doi/10.1002/wcms.93/abstract
+   DOI: 10.1002/wcms.93


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