Author: plessy Date: 2012-09-20 03:01:14 +0000 (Thu, 20 Sep 2012) New Revision: 2487
Added: packages-metadata/a/autoconf-dickey.control packages-metadata/a/autoconf-dickey.copyright packages-metadata/d/debian-policy.control packages-metadata/j/jenkins-remoting.control packages-metadata/j/jenkins-remoting.copyright packages-metadata/p/predictprotein.control packages-metadata/p/predictprotein.copyright packages-metadata/p/predictprotein.upstream packages-metadata/s/stapler.control Modified: packages-metadata/l/libcapture-tiny-perl.control packages-metadata/l/libdate-manip-perl.control packages-metadata/l/librostlab.control packages-metadata/n/nvidia-graphics-drivers-legacy-96xx.control packages-metadata/x/xpra.control packages-metadata/x/xpra.copyright packages-metadata/z/zookeeper.control Log: Daily automatic umegaya push Added: packages-metadata/a/autoconf-dickey.control =================================================================== --- packages-metadata/a/autoconf-dickey.control (rev 0) +++ packages-metadata/a/autoconf-dickey.control 2012-09-20 03:01:14 UTC (rev 2487) @@ -0,0 +1,19 @@ +Source: autoconf-dickey +Section: devel +Priority: extra +Maintainer: Sven Joachim <svenj...@gmx.de> +Build-Depends: debhelper (>= 8), autotools-dev (>= 20100122.1~) +Build-Depends-Indep: m4 +Standards-Version: 3.9.3 +Homepage: http://invisible-island.net/autoconf/autoconf.html +Vcs-Git: git://git.debian.org/collab-maint/autoconf-dickey.git +Vcs-Browser: http://git.debian.org/?p=collab-maint/autoconf-dickey.git;a=summary + +Package: autoconf-dickey +Architecture: all +Depends: m4, ${misc:Depends}, ${perl:Depends} +Description: automatic configure script builder (Thomas Dickey's version) + This hacked version of autoconf is required to bootstrap ncurses and + some other packages maintained upstream by Thomas Dickey. It should + not be used for other purposes. + Added: packages-metadata/a/autoconf-dickey.copyright =================================================================== --- packages-metadata/a/autoconf-dickey.copyright (rev 0) +++ packages-metadata/a/autoconf-dickey.copyright 2012-09-20 03:01:14 UTC (rev 2487) @@ -0,0 +1,140 @@ +This work was packaged for Debian by: + + Sven Joachim <svenj...@gmx.de> on Thu, 16 Feb 2012 19:50:02 +0100 + +It was downloaded from: + + ftp://invisible-island.net/autoconf/ + +Upstream Authors: + + David J. MacKenzie <d...@uunet.uu.net> + Thomas Dickey <dic...@his.com> + + See the THANKS file for other authors and contributors. + +Copyright: + + Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001 + Free Software Foundation, Inc. + +License: + + This program is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2, or (at your option) + any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program; if not, write to the Free Software + Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA + 02110-1301, USA. + + As a special exception, the Free Software Foundation gives unlimited + permission to copy, distribute and modify the configure scripts that + are the output of Autoconf. You need not follow the terms of the GNU + General Public License when using or distributing such scripts, even + though portions of the text of Autoconf appear in them. The GNU + General Public License (GPL) does govern all other use of the material + that constitutes the Autoconf program. + + Certain portions of the Autoconf source text are designed to be copied + (in certain cases, depending on the input) into the output of + Autoconf. We call these the "data" portions. The rest of the Autoconf + source text consists of comments plus executable code that decides which + of the data portions to output in any given case. We call these + comments and executable code the "non-data" portions. Autoconf never + copies any of the non-data portions into its output. + + This special exception to the GPL applies to versions of Autoconf + released by the Free Software Foundation. When you make and + distribute a modified version of Autoconf, you may extend this special + exception to the GPL to apply to your modified version as well, *unless* + your modified version has the potential to copy into its output some + of the text that was the non-data portion of the version that you started + with. (In other words, unless your change moves or copies text from + the non-data portions to the data portions.) If your modification has + such potential, you must delete any notice of this special exception + to the GPL from your modified version. + + +Files Copyright by the Free Software Foundation with other licenses: + +doc/.autoconf.*, doc/standards.*: + + Permission is granted to make and distribute verbatim copies of + this manual provided the copyright notice and this permission notice + are preserved on all copies. + + Permission is granted to process this file through TeX and print the + results, provided the printed document carries copying permission + notice identical to this one except for the removal of this paragraph + (this paragraph not being relevant to the printed manual). + + Permission is granted to copy and distribute modified versions of this + manual under the conditions for verbatim copying, provided that the entire + resulting derived work is distributed under the terms of a permission + notice identical to this one. + + Permission is granted to copy and distribute translations of this manual + into another language, under the above conditions for modified versions, + except that this permission notice may be stated in a translation approved + by the Free Software Foundation. + +Makefile.in, */Makefile.in: + + This Makefile.in is free software; the Free Software Foundation + gives unlimited permission to copy and/or distribute it, + with or without modifications, as long as this notice is preserved. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY, to the extent permitted by law; without + even the implied warranty of MERCHANTABILITY or FITNESS FOR A + PARTICULAR PURPOSE. + + +The Debian packaging is: + + Copyright (C) 2011, 2012 Sven Joachim <svenj...@gmx.de> + +and is licensed under the GPL version 2 or later, +see "/usr/share/common-licenses/GPL-2". + + +Files with other copyright statement: + +package/debian*: Copyright (C) 2010,2012 Thomas E. Dickey + + Permission to use, copy, modify, and distribute this software and its + documentation for any purpose and without fee is hereby granted, + provided that the above copyright notice appear in all copies and that + both that copyright notice and this permission notice appear in + supporting documentation, and that the name of the above listed + copyright holder(s) not be used in advertising or publicity pertaining + to distribution of the software without specific, written prior + permission. + + THE ABOVE LISTED COPYRIGHT HOLDER(S) DISCLAIM ALL WARRANTIES WITH REGARD + TO THIS SOFTWARE, INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY + AND FITNESS, IN NO EVENT SHALL THE ABOVE LISTED COPYRIGHT HOLDER(S) BE + LIABLE FOR ANY SPECIAL, INDIRECT OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES + WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN + ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF + OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE. + +config/install-sh: Copyright 1991 by the Massachusetts Institute of Technology + + Permission to use, copy, modify, distribute, and sell this software and its + documentation for any purpose is hereby granted without fee, provided that + the above copyright notice appear in all copies and that both that + copyright notice and this permission notice appear in supporting + documentation, and that the name of M.I.T. not be used in advertising or + publicity pertaining to distribution of the software without specific, + written prior permission. M.I.T. makes no representations about the + suitability of this software for any purpose. It is provided "as is" + without express or implied warranty. Added: packages-metadata/d/debian-policy.control =================================================================== --- packages-metadata/d/debian-policy.control (rev 0) +++ packages-metadata/d/debian-policy.control 2012-09-20 03:01:14 UTC (rev 2487) @@ -0,0 +1,31 @@ +Source: debian-policy +Section: doc +Priority: optional +Maintainer: Debian Policy List <debian-pol...@lists.debian.org> +Uploaders: Manoj Srivastava <sriva...@debian.org>, + Russ Allbery <r...@debian.org>, + Colin Watson <cjwat...@debian.org>, + Bill Allombert <ballo...@debian.org> +Standards-Version: 3.9.4 +Build-Depends: bsdmainutils, debiandoc-sgml (>= 1.1.47), docbook-dsssl, + docbook-xml, emacs23, groff, jade, links | elinks, pstoedit, sgml-data, + texlive, texlive-latex-extra, tidy +Vcs-Browser: http://git.debian.org/?p=dbnpolicy/policy.git +Vcs-Git: git://git.debian.org/git/dbnpolicy/policy.git + +Package: debian-policy +Architecture: all +Suggests: doc-base +Description: Debian Policy Manual and related documents + This package contains: + - Debian Policy Manual + - Filesystem Hierarchy Standard (FHS) + - Debian Menu sub-policy + - Debian Perl sub-policy + - Debian configuration management specification + - Machine-readable debian/copyright specification + - Authoritative list of virtual package names + - Policy checklist for upgrading your packages + - Paper about libc6 migration + It also replaces the old Packaging Manual; most of the still-relevant + content is now included as appendices to the Policy Manual. Added: packages-metadata/j/jenkins-remoting.control =================================================================== --- packages-metadata/j/jenkins-remoting.control (rev 0) +++ packages-metadata/j/jenkins-remoting.control 2012-09-20 03:01:14 UTC (rev 2487) @@ -0,0 +1,51 @@ +Source: jenkins-remoting +Section: java +Priority: optional +Maintainer: Debian Java Maintainers <pkg-java-maintain...@lists.alioth.debian.org> +Uploaders: James Page <james.p...@ubuntu.com> +DM-Upload-Allowed: yes +Build-Depends: cdbs, debhelper (>= 7), default-jdk, maven-debian-helper (>= 1.4) +Build-Depends-Indep: + default-jdk-doc, + jenkins-test-annotations, + junit (>= 3.8), + libanimal-sniffer-java, + libanimal-sniffer-java-doc, + libargs4j-java, + libargs4j-java-doc, + libasm3-java, + libcommons-codec-java, + libcommons-codec-java-doc, + libcommons-io-java, + libcommons-io-java-doc, + libmaven-dependency-plugin-java, + libmaven-javadoc-plugin-java +Standards-Version: 3.9.3 +Vcs-Git: git://git.debian.org/git/pkg-java/jenkins-remoting.git +Vcs-Browser: http://git.debian.org/?p=pkg-java/jenkins-remoting.git +Homepage: http://jenkins-ci.org + +Package: libjenkins-remoting-java +Architecture: all +Depends: ${maven:Depends}, ${misc:Depends} +Recommends: ${maven:OptionalDepends} +Suggests: libjenkins-remoting-java-doc +Description: Bridge separate JVMs into a single semi-shared space + Allows separate JVMs to be bridged into a single semi-shared space. + . + This package is primarily used by Jenkins for slave node management but + has potential re-use outside of this project. + +Package: libjenkins-remoting-java-doc +Architecture: all +Section: doc +Depends: ${maven:DocDepends}, ${misc:Depends} +Recommends: ${maven:DocOptionalDepends} +Suggests: libjenkins-remoting-java +Description: Documentation for jenkins-remoting + Allows separate JVMs to be bridged into a single semi-shared space. + . + This package is primarily used by Jenkins for slave node management but + has potential re-use outside of this project. + . + This package contains the API documentation of jenkins-remoting. Added: packages-metadata/j/jenkins-remoting.copyright =================================================================== --- packages-metadata/j/jenkins-remoting.copyright (rev 0) +++ packages-metadata/j/jenkins-remoting.copyright 2012-09-20 03:01:14 UTC (rev 2487) @@ -0,0 +1,44 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0 +Upstream-Name: Jenkins Remoting layer +Source: http://jenkins-ci.org + +Files: * +Copyright: 2004-2010, Sun Microsystems, Inc., + 2004-2010, Kohsuke Kawaguchi, + 2004-2010, Ullrich Hafner, + 2004-2010, CloudBees, Inc., + 2010, InfraDNA, Inc +License: MIT + +Files: src/main/java/hudson/remoting/FastPipedOutputStream.java + src/main/java/hudson/remoting/FastPipedInputStream.java +Copyright: 2001, WD + 2006-2008, Makoto YUI +License: Apache-2.0 + +Files: debian/* +Copyright: 2012, Canonical Ltd (http://www.canonical.com). +License: MIT + +License: Apache-2.0 + On Debian GNU/Linux system you can find the complete text of the + Apache-2.0 license in '/usr/share/common-licenses/Apache-2.0' + +License: MIT + Permission is hereby granted, free of charge, to any person obtaining a copy + of this software and associated documentation files (the "Software"), to deal + in the Software without restriction, including without limitation the rights + to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + copies of the Software, and to permit persons to whom the Software is + furnished to do so, subject to the following conditions: + . + The above copyright notice and this permission notice shall be included in + all copies or substantial portions of the Software. + . + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + THE SOFTWARE. Modified: packages-metadata/l/libcapture-tiny-perl.control =================================================================== --- packages-metadata/l/libcapture-tiny-perl.control 2012-09-19 03:01:12 UTC (rev 2486) +++ packages-metadata/l/libcapture-tiny-perl.control 2012-09-20 03:01:14 UTC (rev 2487) @@ -10,7 +10,7 @@ gregor herrmann <gre...@debian.org>, Salvatore Bonaccorso <car...@debian.org>, Alessandro Ghedini <gh...@debian.org> -Standards-Version: 3.9.3 +Standards-Version: 3.9.4 Homepage: http://search.cpan.org/dist/Capture-Tiny/ Vcs-Git: git://git.debian.org/pkg-perl/packages/libcapture-tiny-perl.git Vcs-Browser: http://anonscm.debian.org/gitweb/?p=pkg-perl/packages/libcapture-tiny-perl.git Modified: packages-metadata/l/libdate-manip-perl.control =================================================================== --- packages-metadata/l/libdate-manip-perl.control 2012-09-19 03:01:12 UTC (rev 2486) +++ packages-metadata/l/libdate-manip-perl.control 2012-09-20 03:01:14 UTC (rev 2487) @@ -14,7 +14,7 @@ Rene Mayorga <rmayo...@debian.org>, Jonathan Yu <jaw...@cpan.org>, Chris Butler <chr...@debian.org>, Nicholas Bamber <nicho...@periapt.co.uk>, Fabrizio Regalli <fab...@fabreg.it> -Standards-Version: 3.9.3 +Standards-Version: 3.9.4 Homepage: http://search.cpan.org/dist/Date-Manip/ Vcs-Git: git://git.debian.org/pkg-perl/packages/libdate-manip-perl.git Vcs-Browser: http://anonscm.debian.org/gitweb/?p=pkg-perl/packages/libdate-manip-perl.git Modified: packages-metadata/l/librostlab.control =================================================================== --- packages-metadata/l/librostlab.control 2012-09-19 03:01:12 UTC (rev 2486) +++ packages-metadata/l/librostlab.control 2012-09-20 03:01:14 UTC (rev 2487) @@ -13,7 +13,6 @@ Package: librostlab3 Architecture: any -Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} Description: C++ library for computational biology This library was developed by the Rost Lab. The lab's research is Modified: packages-metadata/n/nvidia-graphics-drivers-legacy-96xx.control =================================================================== --- packages-metadata/n/nvidia-graphics-drivers-legacy-96xx.control 2012-09-19 03:01:12 UTC (rev 2486) +++ packages-metadata/n/nvidia-graphics-drivers-legacy-96xx.control 2012-09-20 03:01:14 UTC (rev 2487) @@ -14,7 +14,6 @@ dkms (>= 2.1.1.1), libxext6, quilt, - ia32-libs (>= 20090804) [amd64], Standards-Version: 3.9.3 Homepage: http://www.nvidia.com XS-Autobuild: yes @@ -29,16 +28,20 @@ libgl1-nvidia${nvidia:Legacy}-glx (= ${binary:Version}), xserver-xorg-video-nvidia${nvidia:Legacy} (= ${binary:Version}), nvidia-alternative${nvidia:Legacy} (= ${binary:Version}), - nvidia-kernel-${nvidia:Version}${nvidia:Perfkit}, + nvidia-kernel${nvidia:Legacy}-dkms (= ${binary:Version}) + | nvidia-kernel-${nvidia:Version}${nvidia:Perfkit}, nvidia-support, ${shlibs:Depends}, ${misc:Depends} +Recommends: + libgl1-nvidia${nvidia:Legacy}-glx-i386 [amd64], Suggests: - nvidia-settings, + nvidia-settings-legacy-173xx, nvidia-kernel${nvidia:Legacy}-dkms (>= ${nvidia:Version}) | nvidia-kernel${nvidia:Legacy}-source (>= ${nvidia:Version}) Provides: nvidia-glx-any, Description: NVIDIA metapackage${nvidia:LegacyDesc} + . This metapackage depends on the NVIDIA binary driver and libraries that provide optimized hardware acceleration of OpenGL applications via a direct-rendering X Server. @@ -62,13 +65,14 @@ Depends: libgl1-nvidia${nvidia:Legacy}-glx (= ${binary:Version}), nvidia-alternative${nvidia:Legacy} (= ${binary:Version}), - nvidia-support, + nvidia-support (>= 20120630), ${nvidia:xorgDepends}, ${shlibs:Depends}, ${misc:Depends} Recommends: - nvidia-kernel-${nvidia:Version}${nvidia:Perfkit}, + nvidia-kernel${nvidia:Legacy}-dkms (= ${binary:Version}) + | nvidia-kernel-${nvidia:Version}${nvidia:Perfkit}, Suggests: - nvidia-settings, + nvidia-settings-legacy-173xx, nvidia-kernel${nvidia:Legacy}-dkms (>= ${nvidia:Version}) | nvidia-kernel${nvidia:Legacy}-source (>= ${nvidia:Version}) Provides: @@ -80,10 +84,11 @@ nvidia-glx-legacy-71xx (<< 71.86.14-3), nvidia-glx-legacy-96xx (<< 96.43.19-2), nvidia-glx-legacy-173xx (<< 173.14.30-2), - fglrx-driver (<< 11-6-~), + fglrx-driver (<< 1:11-6-~), Replaces: nvidia-glx${nvidia:Legacy} (<< 96.43.19-2), Description: NVIDIA binary Xorg driver${nvidia:LegacyDesc} + . These binary drivers provide optimized hardware acceleration of OpenGL applications via a direct-rendering X Server. AGP, PCIe, SLI, TV-out and flat panel displays are also supported. @@ -120,11 +125,13 @@ nvidia-support, ${shlibs:Depends}, ${misc:Depends} Recommends: - nvidia-kernel-${nvidia:Version}${nvidia:Perfkit}, + nvidia-kernel${nvidia:Legacy}-dkms (= ${binary:Version}) + | nvidia-kernel-${nvidia:Version}${nvidia:Perfkit}, Suggests: nvidia-kernel${nvidia:Legacy}-dkms (>= ${nvidia:Version}) | nvidia-kernel${nvidia:Legacy}-source (>= ${nvidia:Version}) Provides: + libgl1-nvidia${nvidia:Legacy}-glx-i386 [i386], libgl1-nvidia-glx-any, Conflicts: libgl1-nvidia${nvidia:Legacy}-dev, @@ -141,12 +148,15 @@ libgl1-nvidia-legacy-71xx-glx (<< 71.86.14-3), # libgl1-nvidia-legacy-96xx-glx (<< 96.43.19-2), libgl1-nvidia-legacy-173xx-glx (<< 173.14.30-2), - fglrx-glx (<< 11-6-~), + fglrx-glx (<< 1:11-6-~), + ia32-libs (<< 20120701) [i386], + nvidia-settings (>= 302), Replaces: nvidia-glx${nvidia:Legacy} (<< 96.43.18), libgl1-nvidia${nvidia:Legacy}-dev, nvidia-glx${nvidia:Legacy}-dev, Description: NVIDIA binary OpenGL libraries${nvidia:LegacyDesc} + . These binary libraries provide optimized hardware acceleration of OpenGL applications via a direct-rendering X Server. . @@ -155,23 +165,16 @@ for a complete list of supported GPUs and PCI IDs. Package: libgl1-nvidia-legacy-96xx-glx-ia32 +Section: non-free/oldlibs Priority: extra Architecture: amd64 Pre-Depends: libc6-i386 (>= 2.9-18), nvidia-installer-cleanup, - ${misc:Pre-Depends} Depends: - libgl1-nvidia-alternatives-ia32, - nvidia-support, ${shlibs:Depends}, ${misc:Depends} Recommends: - nvidia-kernel-${nvidia:Version}${nvidia:Perfkit}, -Suggests: - nvidia-kernel${nvidia:Legacy}-dkms (>= ${nvidia:Version}) - | nvidia-kernel${nvidia:Legacy}-source (>= ${nvidia:Version}) -Provides: - libgl1-nvidia-glx-ia32-any, + libgl1-nvidia${nvidia:Legacy}-glx-i386, Conflicts: libgl1-nvidia-glx-ia32, libgl1-nvidia-glx-ia32-any, @@ -185,13 +188,13 @@ libgl1-nvidia${nvidia:Legacy}-glx (<< ${nvidia:Version}), Replaces: nvidia-glx${nvidia:Legacy}-ia32 (<< 96.43.18), -Description: NVIDIA binary OpenGL 32-bit libraries${nvidia:LegacyDesc} - These binary 32-bit libraries provide optimized hardware acceleration of - OpenGL applications via a direct-rendering X Server. +Description: please switch to multiarch libgl1-nvidia${nvidia:Legacy}-glx:i386 . - See the description of the nvidia-glx${nvidia:Legacy} package - or /usr/share/doc/libgl1-nvidia${nvidia:Legacy}-glx/README.txt.gz - for a complete list of supported GPUs and PCI IDs. + This is an empty transitional package to aid switching to multiarch. + . + Run the following commands to install the multiarch library: + * dpkg --add-architecture i386 ; apt-get update + * apt-get install libgl1-nvidia${nvidia:Legacy}-glx:i386 Package: nvidia-alternative-legacy-96xx Architecture: i386 amd64 @@ -205,6 +208,7 @@ nvidia-glx${nvidia:Legacy} (<< 96.43.19-2), libgl1-nvidia${nvidia:Legacy}-glx (<< 96.43.19-2), Description: allows the selection of NVIDIA as GLX provider + . In setups with several NVIDIA driver versions installed (e.g. current and legacy) this metapackage registers an alternative to allow easy switching between the different versions. @@ -218,7 +222,7 @@ Package: nvidia-kernel-legacy-96xx-dkms Section: non-free/kernel Architecture: i386 amd64 -Multi-Arch: allowed +Multi-Arch: foreign Pre-Depends: nvidia-installer-cleanup, Depends: @@ -235,6 +239,7 @@ Breaks: make (= 3.82-1), Description: NVIDIA binary kernel module DKMS source${nvidia:LegacyDesc} + . This package builds the NVIDIA Xorg binary kernel module needed by nvidia-glx${nvidia:Legacy}, using DKMS. Provided that you have the kernel header packages installed, the kernel @@ -267,6 +272,7 @@ Breaks: make (= 3.82-1), Description: NVIDIA binary kernel module source${nvidia:LegacyDesc} + . This package provides the source for the NVIDIA Xorg binary kernel module needed by nvidia-glx${nvidia:Legacy} in a form suitable for use by module-assistant or kernel-package. Added: packages-metadata/p/predictprotein.control =================================================================== --- packages-metadata/p/predictprotein.control (rev 0) +++ packages-metadata/p/predictprotein.control 2012-09-20 03:01:14 UTC (rev 2487) @@ -0,0 +1,38 @@ +Source: predictprotein +Section: science +Priority: extra +Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> +Uploaders: Guy Yachdav <gyach...@rostlab.org>, Laszlo Kajan <lka...@rostlab.org>, Simon Domke <dom...@in.tum.de> +Build-Depends: debhelper (>= 8) +Standards-Version: 3.9.3 +Homepage: http://www.predictprotein.org +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rostlab/predictprotein/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/rostlab/predictprotein/trunk/ +DM-Upload-Allowed: yes + +Package: predictprotein +Architecture: all +Depends: ${misc:Depends}, blast2, bioperl, ncoils (>= 2002-3), disulfinder, hmmer (>= 3.0), hmmer2, librg-exception-perl, librg-utils-perl (>= 1.0.24), ncbi-seg, make, norsnet, norsp, perl, predictnls, profbval (>= 1.0.15), profisis, profphd, proftmb (>= 1.1.9-1) +Recommends: pp-popularity-contest +Suggests: pp-cache-mgr (>= 1.0.3), predictprotein-nonfree +Description: suite of protein sequence analysis tools + PredictProtein is a sequence analysis suite providing prediction of protein + structure and function. + . + PredictProtein takes a protein sequence as input and provides the following + per-residue, or whole protein annotations: + * secondary structure + * solvent accessibility + * multiple sequence alignments + * PROSITE sequence motifs + * low-complexity regions + * nuclear localisation signals + * regions lacking regular structure (NORS) + * unstructured loops + * transmembrane helices + * transmembrane beta barrels + * coiled-coil regions + * disulfide-bonds + * disordered regions + * B-value flexibility + * protein-protein interaction sites Added: packages-metadata/p/predictprotein.copyright =================================================================== --- packages-metadata/p/predictprotein.copyright (rev 0) +++ packages-metadata/p/predictprotein.copyright 2012-09-20 03:01:14 UTC (rev 2487) @@ -0,0 +1,64 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: predictprotein +Upstream-Contact: Guy Yachdav <gyach...@rostlab.org> +Source: ftp://rostlab.org/predictprotein/ + +Files: debian/* +Copyright: 2010 Guy Yachdav <gyach...@rostlab.org> + 2012 Laszlo Kajan <lka...@rostlab.org> + 2012 Simon Domke <dom...@in.tum.de> +License: GPL-3+ + +Files: helper_apps/prosite_scan.pl +Copyright: + 2008 Guy Yachdav <gyach...@rostlab.org> (modifications) + public-domain (original: ftp://lausanne.isb-sib.ch/pub/software/unix/prosite_scan/prosite_scan , author Kay Hofmann <kay.hofm...@uni-koeln.de>) +License: public-domain and GPL-3+ + Original source (available at ftp://lausanne.isb-sib.ch/pub/software/unix/prosite_scan/prosite_scan) in public domain: + http://lists.alioth.debian.org/pipermail/debian-med-packaging/2012-July/016408.html + On 14/07/12 21:51, Kay Hofmann wrote: + > Dear Lazlo, + > + > Like all other software I have made available (so far), the script prosite_scan.pl that you refer to is in the public domain. + > Feel free to do with it whatever you like. + > + > Best Wishes, + > + > Kay + . + Any modification to this program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + . + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. + . + On Debian systems, the complete text of the GNU General Public + License version 3 can be found in "/usr/share/common-licenses/GPL-3". + +Files: * +Copyright: 2010 ROSTLAB +License: GPL-3+ + +License: GPL-3+ + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + . + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. + . + On Debian systems, the complete text of the GNU General Public + License version 3 can be found in "/usr/share/common-licenses/GPL-3". Added: packages-metadata/p/predictprotein.upstream =================================================================== --- packages-metadata/p/predictprotein.upstream (rev 0) +++ packages-metadata/p/predictprotein.upstream 2012-09-20 03:01:14 UTC (rev 2487) @@ -0,0 +1,14 @@ +Bug-Database: https://rostlab.org/bugzilla3/buglist.cgi?product=predictprotein&component=predictprotein&resolution=--- +Bug-Submit: https://rostlab.org/bugzilla3/enter_bug.cgi?product=predictprotein +Reference: + Author: Burkhrd Rost and Guy Yachdav and Jinfeng Liu + Title: The PredictProtein server + Journal: Nucleic Acids Research + Year: 2004 + Volume: 32 + Number: 2 + Pages: W321-W326 + DOI: 10.1093/nar/gkh377 + PMID: 15215403 + URL: http://nar.oxfordjournals.org/content/32/suppl_2/W321.abstract + eprint: http://nar.oxfordjournals.org/content/32/suppl_2/W321.full Added: packages-metadata/s/stapler.control =================================================================== --- packages-metadata/s/stapler.control (rev 0) +++ packages-metadata/s/stapler.control 2012-09-20 03:01:14 UTC (rev 2487) @@ -0,0 +1,82 @@ +Source: stapler +Section: java +Priority: optional +Maintainer: Debian Java Maintainers <pkg-java-maintain...@lists.alioth.debian.org> +Uploaders: James Page <james.p...@ubuntu.com> +DM-Upload-Allowed: yes +Build-Depends: + cdbs, + debhelper (>= 7), + default-jdk, + javahelper, + maven-debian-helper +Build-Depends-Indep: + default-jdk-doc, + groovy, + junit4, + libannotation-indexer-java, + libasm3-java, + libcommons-beanutils-java, + libcommons-discovery-java, + libcommons-fileupload-java, + libcommons-io-java, + libcommons-jexl-java, + libcssparser-java, + libguava-java, + libguava-java-doc, + libjellydoc-java, + libjenkins-commons-jelly-java, + libjenkins-htmlunit-java, + libjenkins-dom4j-java, + libjenkins-json-java, + libjetty-java, + liblocalizer-java, + libmaven-enforcer-plugin-java, + libmaven-install-plugin-java, + libmaven-javadoc-plugin-java, + libmetainf-services-java, + libmetainf-services-java-doc, + libmockito-java, + libservlet2.5-java, + libtiger-types-java +Standards-Version: 3.9.3 +Homepage: http://stapler.java.net +Vcs-Git: git://git.debian.org/git/pkg-java/stapler.git +Vcs-Browser: http://git.debian.org/?p=pkg-java/stapler.git + +Package: libstapler-java +Architecture: all +Depends: ${maven:Depends}, ${misc:Depends} +Recommends: ${maven:OptionalDepends} +Description: Stapler HTTP request handling engine + Stapler is a library that "staples" your application objects to URLs, + making it easier to write web applications. The core idea of Stapler + is to automatically assign URLs for your objects, creating an intuitive + URL hierarchy. + . + Stapler provides bindings for: + * Commons Jelly + * Groovy + * JRuby (not packaged) + * Java Server Pages + +Package: libstapler-java-doc +Architecture: all +Section: doc +Depends: ${maven:DocDepends}, ${misc:Depends} +Recommends: ${maven:DocOptionalDepends} +Suggests: libstapler-java +Description: Documentation for libstapler-java + Stapler is a library that "staples" your application objects to URLs, + making it easier to write web applications. The core idea of Stapler + is to automatically assign URLs for your objects, creating an intuitive + URL hierarchy. + . + Stapler provides bindings for: + * Commons Jelly + * Groovy + * JRuby (not packaged) + * Java Server Pages + * JRebel (not packaged) + . + This package provides the API documentation for libstapler-java. Modified: packages-metadata/x/xpra.control =================================================================== --- packages-metadata/x/xpra.control 2012-09-19 03:01:12 UTC (rev 2486) +++ packages-metadata/x/xpra.control 2012-09-20 03:01:14 UTC (rev 2487) @@ -3,7 +3,8 @@ Priority: optional Maintainer: Python Applications Packaging Team <python-apps-t...@lists.alioth.debian.org> Uploaders: أحمد المحمودي (Ahmed El-Mahmoudy) <aelmahmo...@sabily.org>, - Miguel Landaeta <mig...@miguel.cc> + Miguel Landaeta <mig...@miguel.cc>, + Dmitry Smirnov <only...@member.fsf.org> Build-Depends: cython (>> 0.14.0), debhelper (>= 9), libavcodec-dev, @@ -34,6 +35,7 @@ python-imaging, x11-xserver-utils, xvfb, +Recommends: xserver-xorg-video-dummy Suggests: openssh-client, openssh-server Description: tool to detach/reattach running X programs Xpra gives you the functionality of GNU Screen for X applications. Modified: packages-metadata/x/xpra.copyright =================================================================== --- packages-metadata/x/xpra.copyright 2012-09-19 03:01:12 UTC (rev 2486) +++ packages-metadata/x/xpra.copyright 2012-09-20 03:01:14 UTC (rev 2487) @@ -1,6 +1,6 @@ -Format: http://anonscm.debian.org/viewvc/dep/web/deps/dep5.mdwn?view=co&pathrev=174 +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0 Upstream-Name: xpra -Upstream-Contact: Antoine Martin <anto...@devloop.org.uk>, +Upstream-Contact: Antoine Martin <anto...@devloop.org.uk> Source: http://xpra.org/ Files: * @@ -9,28 +9,11 @@ Files: xpra/server.py xpra/scripts/main.py -Copyright: 2008 Nathaniel Smith <n...@pobox.com> - 2010-2011 Antoine Martin <anto...@devloop.org.uk> - 2011 Serviware (Arthur Huillet, <ahuil...@serviware.com>) +Copyright: 2008-2010 Nathaniel Smith <n...@pobox.com> + 2009-2011 Antoine Martin <anto...@devloop.org.uk> + 2011-2012 Serviware (Arthur Huillet, <ahuil...@serviware.com>) License: GPL-2+ -Files: xpra/client.py -Copyright: 2008,2010 Nathaniel Smith <n...@pobox.com> - 2010-2011 Antoine Martin <anto...@devloop.org.uk> - 2011 Serviware (Arthur Huillet, <ahuil...@serviware.com>) -License: GPL-2+ - -Files: xpra/test_HMAC.py - xpra/darwin/gui.py - xpra/darwin/__init__.py - xpra/test_bencode.py -Copyright: 2011 Antoine Martin <anto...@devloop.org.uk> -License: GPL-2+ - -Files: xpra/scripts/client_launcher.py -Copyright: 2009-2011 Antoine Martin <anto...@devloop.org.uk> -License: GPL-2+ - Files: parti/addons/ipython_view.py Copyright: 2007 IBM Corporation License: BSD @@ -60,11 +43,41 @@ OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. +Files: xpra/x264/win32/*.h + xpra/vpx/win32/*.h +Copyright: 2006-2008 Alexander Chemeris +License: BSD-2-clause + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions are met: + . + 1. Redistributions of source code must retain the above copyright notice, + this list of conditions and the following disclaimer. + . + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + . + 3. The name of the author may be used to endorse or promote products + derived from this software without specific prior written permission. + . + THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR IMPLIED + WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF + MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO + EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, + SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, + PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; + OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, + WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR + OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF + ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + Files: debian/* Copyright: 2009 Evan Dandrea <ev...@ubuntu.com> 2010 Michael Schutte <mi...@uiae.at> + 2010 Matthias Klose <d...@ubuntu.com> 2010-2011 Miguel Landaeta <mig...@miguel.cc> - 2010-2011 أحمد المحمودي (Ahmed El-Mahmoudy) <aelmahmo...@sabily.org> + 2010-2012 أحمد المحمودي (Ahmed El-Mahmoudy) <aelmahmo...@sabily.org> + 2012 Dmitry Smirnov <only...@member.fsf.org> License: GPL-2+ License: GPL-2+ Modified: packages-metadata/z/zookeeper.control =================================================================== --- packages-metadata/z/zookeeper.control 2012-09-19 03:01:12 UTC (rev 2486) +++ packages-metadata/z/zookeeper.control 2012-09-20 03:01:14 UTC (rev 2487) @@ -12,7 +12,7 @@ ant-optional, autoconf, automake, - debhelper (>= 8.9.7~), + debhelper (>= 9~), default-jdk (>= 1:1.6), default-jdk-doc, help2man, _______________________________________________ Collab-qa-commits mailing list Collab-qa-commits@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/collab-qa-commits
