Author: plessy Date: 2013-03-02 03:58:53 +0000 (Sat, 02 Mar 2013) New Revision: 2631
Added: packages-metadata/c/cdbfasta.control packages-metadata/c/cdbfasta.copyright packages-metadata/m/macs.control packages-metadata/m/macs.copyright Modified: packages-metadata/n/nwchem.upstream Log: Daily automatic umegaya push Added: packages-metadata/c/cdbfasta.control =================================================================== --- packages-metadata/c/cdbfasta.control (rev 0) +++ packages-metadata/c/cdbfasta.control 2013-03-02 03:58:53 UTC (rev 2631) @@ -0,0 +1,21 @@ +Source: cdbfasta +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> +DM-Upload-Allowed: yes +Uploaders: Steffen Moeller <moel...@debian.org>, + Andreas Tille <ti...@debian.org>, + Tim Booth <tbo...@ceh.ac.uk> +Build-Depends: debhelper (>= 9), zlib1g-dev, help2man +Standards-Version: 3.9.4 +Homepage: http://cdbfasta.sourceforge.net/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/cdbfasta/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/cdbfasta/trunk/ + +Package: cdbfasta +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: Constant DataBase indexing and retrieval tools for multi-FASTA files + CDB (Constant DataBase) can be used for creating indices for quick + retrieval of any particular sequences from large multi-FASTA files. + It has the option to compress data records in order to save space. Added: packages-metadata/c/cdbfasta.copyright =================================================================== --- packages-metadata/c/cdbfasta.copyright (rev 0) +++ packages-metadata/c/cdbfasta.copyright 2013-03-02 03:58:53 UTC (rev 2631) @@ -0,0 +1,35 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: cdbfasta +Upstream-Contact: Geo Pertea <geo.per...@gmail.com>, +Source: http://sourceforge.net/projects/cdbfasta/files/ + +Files: * +Copyright: © 2002-2010 Geo Pertea <geo.per...@gmail.com>, + Valentin Antonescu <valduboisv...@yahoo.com> + The Institute for Genomic Research +License: PD + Date: Mon, 17 Dec 2012 11:26:54 -0500 + From: Geo <geo.per...@gmail.com> + To: andr...@an3as.eu + CC: valentin antonescu <valduboisv...@yahoo.com> + Subject: Re: Fwd: Please forward to Geo Pertea: What exat license for cdbfasta? + . + Hi Andreas, + I don't think about the licensing issue much and this may be related to + the fact that the cdbfasta code if heavily based on Daniel J. Bernstein + <http://en.wikipedia.org/wiki/Daniel_J._Bernstein>'s cdb source code + which has been notably license-free + <http://en.wikipedia.org/wiki/License-free_software>. However, since DJB + released his individual source code files to public domain we also + consider the whole cdbfasta code to be public domain, free and open + source software. + . + Thanks, + --geo + +Files: debian/* +Copyright: © 2010 Steffen Moeller <moel...@debian.org> + © 2012 Andreas Tille <ti...@debian.org> +License: GPL-3 + On Debian systems, the full text of the GNU General Public License version 3 + can be found in the file `/usr/share/common-licenses/GPL-3'. Added: packages-metadata/m/macs.control =================================================================== --- packages-metadata/m/macs.control (rev 0) +++ packages-metadata/m/macs.control 2013-03-02 03:58:53 UTC (rev 2631) @@ -0,0 +1,28 @@ +Source: macs +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> +DM-Upload-Allowed: yes +Uploaders: Tim Booth <tbo...@ceh.ac.uk>, + H. Soon Gweon <hyu...@ceh.ac.uk>, + Andreas Tille <ti...@debian.org> +Build-Depends: debhelper (>= 9), cython (>= 0.15), python-dev (>= 2.7), help2man, + python-numpy +Standards-Version: 3.9.4 +X-Python-Version: >=2.7 +Homepage: https://github.com/taoliu/MACS/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/macs/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/macs/trunk/ + +Package: macs +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, python-numpy +Description: Model-based Analysis of ChIP-Seq on short reads sequencers + MACS empirically models the length of the sequenced ChIP fragments, which + tends to be shorter than sonication or library construction size estimates, + and uses it to improve the spatial resolution of predicted binding sites. + MACS also uses a dynamic Poisson distribution to effectively capture local + biases in the genome sequence, allowing for more sensitive and robust + prediction. MACS compares favorably to existing ChIP-Seq peak-finding + algorithms, is publicly available open source, and can be used for ChIP-Seq + with or without control samples. Added: packages-metadata/m/macs.copyright =================================================================== --- packages-metadata/m/macs.copyright (rev 0) +++ packages-metadata/m/macs.copyright 2013-03-02 03:58:53 UTC (rev 2631) @@ -0,0 +1,19 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: MACS +Upstream-Contact: Tao Liu <vladimir....@gmail.com>, + Yong Zhang <z...@jimmy.harvard.edu> +Source: https://github.com/taoliu/MACS/downloads + +Files: * +Copyright: 2008 Zhang et al. +License: Artistic + The complete text of the Artistic License can be found in + /usr/share/common-licenses/Artistic + +Files: debian/* +Copyright: 2011 Tim Booth <tbo...@ceh.ac.uk>, + Andreas Tille <ti...@debian.org> +License: Artistic + The complete text of the Artistic License can be found in + /usr/share/common-licenses/Artistic + Modified: packages-metadata/n/nwchem.upstream =================================================================== --- packages-metadata/n/nwchem.upstream 2013-03-01 03:58:51 UTC (rev 2630) +++ packages-metadata/n/nwchem.upstream 2013-03-02 03:58:53 UTC (rev 2631) @@ -1,5 +1,5 @@ Reference: - Author: "M. Valiev and E.J. Bylaska and N. Govind and K. Kowalski and T.P. Straatsma and H.J.J. van Dam and D. Wang and J. Nieplocha and E. Apra and T.L. Windus and W.A. de Jong + Author: "M. Valiev and E.J. Bylaska and N. Govind and K. Kowalski and T.P. Straatsma and H.J.J. van Dam and D. Wang and J. Nieplocha and E. Apra and T.L. Windus and W.A. de Jong" Title: "NWChem: a comprehensive and scalable open-source solution for large scale molecular simulations" Journal: Comput. Phys. Commun. Year: 2010 _______________________________________________ Collab-qa-commits mailing list Collab-qa-commits@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/collab-qa-commits
