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here is the log from the commit of package python-photutils for
openSUSE:Factory checked in at 2024-11-09 20:58:08
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/python-photutils (Old)
and /work/SRC/openSUSE:Factory/.python-photutils.new.2017 (New)
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Package is "python-photutils"
Sat Nov 9 20:58:08 2024 rev:26 rq:1222854 version:2.0.2
Changes:
--------
--- /work/SRC/openSUSE:Factory/python-photutils/python-photutils.changes
2024-07-11 20:34:04.562823628 +0200
+++
/work/SRC/openSUSE:Factory/.python-photutils.new.2017/python-photutils.changes
2024-11-09 20:58:46.975448472 +0100
@@ -1,0 +2,232 @@
+Fri Nov 8 15:08:58 UTC 2024 - Ben Greiner <[email protected]>
+
+- Update to 2.0.2
+ ## Bug Fixes
+ * Due to an upstream bug in bottleneck with float32 arrays,
+ bottleneck nan-functions are now used internally only for
+ float64 arrays. Performance may be impacted for computations
+ involving arrays with dtype other than float64. Affected
+ functions are used in the aperture, background, detection,
+ profiles, psf, and segmentation subpackages. This change has no
+ impact if bottleneck is not installed.
+ ### photutils.background
+ * Fixed a bug in Background2D where an error would be raised when
+ using the BkgIDWInterpolator interpolator when any mesh was
+ excluded, e.g., due to an input mask. [#1940]
+ ### photutils.detection
+ * Fixed a bug in the star finders (DAOStarFinder, IRAFStarFinder,
+ and StarFinder) when exclude_border=True. Also, fixed an issue
+ with exclude_border=True where if all sources were in the
+ border region then an error would be raised. [#1943]
+- Release 2.0.1
+ ## Bug Fixes
+ ### photutils.background
+ * Fixed a bug in SExtractorBackground where the dimensionality of
+ the returned value would not be preserved if the output was a
+ single value. [#1934]
+ * Fixed an issue in Background2D where if the box_size equals the
+ input array shape the input data array could be modified.
+ [#1935]
+- Release 2.0.0
+ ## General
+ * The regions package is now an optional dependency. [#1813]
+ * The minimum required Astropy is now 5.3. [#1839]
+ * SciPy is now a required dependency. [#1880]
+ * The minimum required SciPy is now 1.10. [#1880]
+ * The minimum required NumPy is now 1.24. [#1881]
+ * The minimum required Matplotlib is now 3.7. [#1881]
+ * The minimum required GWCS is now 0.19. [#1881]
+ * Importing tools from all subpackages now requires including the
+ subpackage name. Also, PSF matching tools must now be imported
+ from photutils.psf.matching instead of photutils.psf. [#1879,
+ #1904]
+ ## New Features
+ ### photutils.aperture
+ * The metadata in the tables generated by aperture_photometry and
+ ApertureStats now include the aperture name and shape
+ parameters. [#1849]
+ * aperture_photometry and ApertureStats now accept supported
+ regions.Region objects, i.e., those corresponding to circular,
+ elliptical, and rectangular apertures. [#1813, #1852]
+ * A new region_to_aperture convenience function has been added to
+ convert supported regions.Region objects to Aperture objects.
+ [#1813, #1852]
+ ### photutils.background
+ * The Background2D class has been refactored to significantly
+ reduce its memory usage. In some cases, it is also
+ significantly faster. [#1870, #1872, #1873]
+ * A new npixels_mesh property was added to Background2D that
+ gives a 2D array of the number of pixels used to compute the
+ statistics in the low-resolution grid. [#1870]
+ * A new npixels_map property was added to Background2D that gives
+ a 2D array of the number of pixels used to compute the
+ statistics in each mesh, resized to the shape of the input
+ data. [#1871]
+ ### photutils.centroids
+ * Quantity arrays can now be input to centroid_1dg and
+ centroid_2dg. [#1861]
+ ### photutils.datasets
+ * Added a new params_table_to_models function to create a list of
+ models from a table of model parameters. [#1896]
+ ### photutils.psf
+ * Added new xy_bounds keyword to PSFPhotometry and
+ IterativePSFPhotometry to allow one to bound the x and y model
+ parameters during the fitting. [#1805]
+ * The extract_stars function can now accept NDData inputs with
+ uncertainty types other than weights. [#1821]
+ * Added new GaussianPSF, CircularGaussianPSF, GaussianPRF,
+ CircularGaussianPRF, and MoffatPSF PSF model classes. [#1838,
+ #1898, #1918]
+ * Added new AiryDiskPSF PSF model class. [#1843, #1918]
+ * Added new CircularGaussianSigmaPRF PSF model class. [#1845,
+ #1918]
+ * The IntegratedGaussianPRF model now supports units. [#1838]
+ * A new results attribute was added to PSFPhotometry to store the
+ returned table of fit results. [#1858]
+ * Added new fit_fwhm convenience function to estimate the FWHM of
+ one or more sources in an image by fitting a circular 2D
+ Gaussian PSF model. [#1859, #1887, #1899, #1918]
+ * Added new fit_2dgaussian convenience function to fit a circular
+ 2D Gaussian PSF to one or more sources in an image. [#1859,
+ #1887, #1899]
+ * Added new ImagePSF model class to represent a PSF model as an
+ image. [#1890]
+ * The GriddedPSFModel model now has a bounding_box method to
+ return the bounding box of the model. [#1891]
+ * The GriddedPSFModel class has been refactored to significantly
+ improve its performance. In typical PSF photometry use cases,
+ it is now about 4 times faster than previous versions. [#1903]
+ ### photutils.segmentation
+ * Reduced the memory usage and improved the performance of source
+ deblending with deblend_sources and SourceFinder. [#1924,
+ #1925, #1926]
+ * Improved the accuracy of the progress bar in deblend_sources
+ and SourceFinder when using multiprocessing. Also added the
+ source ID label number to the progress bar. [#1925, 1926]
+ ## Bug Fixes
+ ### photutils.aperture
+ * Fixed a bug checking that the subpixels keyword is a strictly
+ positive integer. [#1816]
+ ### photutils.datasets
+ * Fixed an issue in make_model_image where if the bbox_factor was
+ input and the model bounding box did not have a factor keyword
+ then an error would be raised. [#1921]
+ ### photutils.detection
+ * Fixed an issue where DAOStarFinder would not return any sources
+ if the input threshold was set to zero due to the flux being
+ non-finite. [#1882]
+ ### photutils.isophote
+ * Fixed a bug in build_ellipse_model where if
+ high_harmonics=True, the harmonics were not correctly added to
+ the model. [#1810]
+ ### photutils.psf
+ * Fixed a bug in make_psf_model where if the input model had
+ amplitude units, an error would be raised. [#1894]
+ ## API Changes
+ * The sklearn version information has been removed from the meta
+ attribute in output tables. sklearn was removed as an optional
+ dependency in 1.13.0. [#1807]
+ ### photutils.background
+ * The Background2D background_mesh and background_rms_mesh
+ properties will have units if the input data has units. [#1870]
+ * The Background2D edge_method keyword is now deprecated. When
+ edge_method is eventually removed, the 'pad' option will always
+ be used. [#1870]
+ * The Background2D background_mesh_masked,
+ background_rms_mesh_masked, and mesh_nmasked properties are now
+ deprecated. [#1870]
+ * To reduce memory usage, Background2D no longer keeps a cached
+ copy of the returned background and background_rms properties.
+ [#1870]
+ * The Background2D data, mask, total_mask, nboxes, box_npixels,
+ and nboxes_tot attributes have been removed. [#1870]
+ * The BkgZoomInterpolator grid_mode keyword is now deprecated.
+ When grid_mode is eventually removed, the True option will
+ always be used. [#1870]
+ * The Background2D background, background_rms, background_mesh,
+ and background_rms_mesh properties now have the same dtype as
+ the input data. [#1922]
+ ### photutils.centroids
+ * For consistency with other fitting functions (including PSF
+ fitting), the centroid_1dg and centroid_2dg functions now fit
+ only a 1D or 2D Gaussian model, respectively, excluding any
+ constant component. The input data are required to be
+ background-subtracted. [#1861]
+ * The fitter used in centroid_1dg and centroid_2dg was changed
+ from LevMarLSQFitter to TRFLSQFitter. LevMarLSQFitter uses the
+ legacy SciPy function scipy.optimize.leastsq, which is no
+ longer recommended. [#1917]
+ ### photutils.datasets
+ * The deprecated make module has been removed. Instead of
+ importing functions from photutils.datasets.make, import
+ functions from photutils.datasets. [#1884]
+ * The deprecated make_model_sources_image,
+ make_gaussian_prf_sources_image, make_gaussian_sources_table,
+ make_test_psf_data, make_random_gaussians_table, and
+ make_imagehdu functions have been removed. [#1884]
+ ### photutils.detection
+ * The deprecated sky keyword in DAOStarFinder and IRAFStarFinder
+ has been removed. Also, there will no longer be a sky column in
+ the output table. [#1884]
+ * The DAOStarFinder flux and mag columns were changed to give
+ sensible values. Previously, the flux value was defined by the
+ original DAOFIND algorithm as a measure of the intensity ratio
+ of the amplitude of the best fitting Gaussian function at the
+ object position to the detection threshold. A daofind_mag
+ column was added for comparison to the original IRAF DAOFIND
+ algorithm. [#1885]
+ ### photutils.isophote
+ * The build_ellipse_model function now raises a ValueError if the
+ input isolist is empty. [#1809]
+ ### photutils.profiles
+ * The fitter used in RadialProfile to fit the profile with a
+ Gaussian was changed from LevMarLSQFitter to TRFLSQFitter.
+ LevMarLSQFitter uses the legacy SciPy function
+ scipy.optimize.leastsq, which is no longer recommended. [#1899]
+ ### photutils.psf
+ * The IntegratedGaussianPRF class now must be initialized using
+ keyword-only arguments. [#1838]
+ * The IntegratedGaussianPRF class has been moved to the new
+ functional_models module. [#1838]
+ * The models and griddedpsfmodel modules have been renamed to
+ image_models and gridded_models, respectively. [#1838]
+ * The IntegratedGaussianPRF model class has been renamed to
+ CircularGaussianPRF. IntegratedGaussianPRF is now deprecated.
+ [#1845]
+ * Some PSF tools have moved to new modules. The PRFAdapter class
+ and the make_psf_model and grid_from_epsfs functions have been
+ moved to the new model_helpers module. The make_psf_model_image
+ function has been moved to the new simulations module. It is
+ recommended that all of these tools be imported from
+ photutils.psf without using the submodule name. [#1854, #1901]
+ * The PSFPhotometry fit_results attribute has been renamed to
+ fit_info. fit_results is now deprecated. [#1858]
+ * The PRFAdapter class has been deprecated. Instead, use a
+ ImagePSF model derived from the discretize_model function in
+ astropy.convolution. [#1865]
+ * The FittableImageModel and EPSFModel classes have been
+ deprecated. Instead, use the new ImagePSF model class. [#1890]
+ * The default fitter for PSFPhotometry, IterativePSFPhotometry,
+ and EPSFFitter was changed from LevMarLSQFitter to
+ TRFLSQFitter. LevMarLSQFitter uses the legacy SciPy function
+ scipy.optimize.leastsq, which is no longer recommended. [#1899]
+ * psf_shape is now an optional keyword in the make_model_image
+ and make_residual_image methods of PSFPhotometry and
+ IterativePSFPhotometry. The value defaults to using the model
+ bounding box to define the shape and is required only if the
+ PSF model does not have a bounding box attribute. [#1921]
+ ### photutils.psf.matching
+ * PSF matching tools must now be imported from
+ photutils.psf.matching instead of photutils.psf. [#1904]
+ ### photutils.segmentation
+ * The SegmentationImage relabel_consecutive, resassign_label(s),
+ keep_label(s), remove_label(s), remove_border_labels, and
+ remove_masked_labels methods now keep the original dtype of the
+ segmentation image instead of always changing it to int
+ (int64). [#1878, #1923]
+ * The detect_sources and deblend_sources functions now return a
+ SegmentationImage instance whose data dtype is np.int32 instead
+ of int (int64) unless more than (2**32 - 1) labels are needed.
+ [#1878]
+
+-------------------------------------------------------------------
@@ -106,3 +338,3 @@
-PSFPhotometry and IterativePSFPhotometry now raise a ValueError if
-the input psf_model is not two-dimensional with n_inputs=2 and
-n_outputs=1. [#1741]
+ * PSFPhotometry and IterativePSFPhotometry now raise a ValueError
+ if the input psf_model is not two-dimensional with n_inputs=2
+ and n_outputs=1. [#1741]
Old:
----
photutils-1.13.0.tar.gz
New:
----
photutils-2.0.2.tar.gz
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-photutils.spec ++++++
--- /var/tmp/diff_new_pack.YDcDb9/_old 2024-11-09 20:58:47.563472932 +0100
+++ /var/tmp/diff_new_pack.YDcDb9/_new 2024-11-09 20:58:47.563472932 +0100
@@ -17,16 +17,16 @@
Name: python-photutils
-Version: 1.13.0
+Version: 2.0.2
Release: 0
Summary: An Astropy package for photometry
License: BSD-3-Clause
Group: Productivity/Scientific/Astronomy
URL: https://github.com/astropy/photutils
Source:
https://files.pythonhosted.org/packages/source/p/photutils/photutils-%{version}.tar.gz
-BuildRequires: %{python_module Cython >= 3 with %python-Cython < 3.1}
+BuildRequires: %{python_module Cython >= 3 with %python-Cython < 4}
BuildRequires: %{python_module devel >= 3.9}
-BuildRequires: %{python_module extension-helpers >= 1 with
%python-extension-helpers < 2}
+BuildRequires: %{python_module extension-helpers >= 1}
BuildRequires: %{python_module numpy-devel >= 1.25}
BuildRequires: %{python_module pip}
BuildRequires: %{python_module setuptools >= 61.2}
@@ -34,24 +34,25 @@
BuildRequires: %{python_module wheel}
BuildRequires: fdupes
BuildRequires: python-rpm-macros
-Requires: python-astropy >= 5.1
-Requires: python-numpy >= 1.25
+Requires: python-astropy >= 5.3
+Requires: python-numpy >= 1.24
+Requires: python-scipy >= 1.10
Recommends: python-Bottleneck
Recommends: python-Shapely
-Recommends: python-gwcs >= 0.18
-Recommends: python-matplotlib >= 3.5
+Recommends: python-gwcs >= 0.19
+Recommends: python-matplotlib >= 3.7
Recommends: python-rasterio
Recommends: python-scikit-image >= 0.19.0
-Recommends: python-scipy >= 1.7.2
Recommends: python-tqdm
# SECTION test requirements
BuildRequires: %{python_module Bottleneck}
-BuildRequires: %{python_module astropy >= 5.1}
-BuildRequires: %{python_module gwcs >= 0.18}
-BuildRequires: %{python_module matplotlib >= 3.5}
+BuildRequires: %{python_module astropy >= 5.3}
+BuildRequires: %{python_module gwcs >= 0.19}
+BuildRequires: %{python_module matplotlib >= 3.7}
BuildRequires: %{python_module pytest-astropy >= 0.10}
+BuildRequires: %{python_module pytest-xdist >= 2.5}
BuildRequires: %{python_module scikit-image >= 0.19.0}
-BuildRequires: %{python_module scipy >= 1.7.2}
+BuildRequires: %{python_module scipy >= 1.10}
# /SECTION
%python_subpackages
@@ -61,7 +62,7 @@
%prep
%autosetup -p1 -n photutils-%{version}
-sed -i 's/--color=yes//' pyproject.toml
+sed -i "/'--color=yes',/d" pyproject.toml
%build
export CFLAGS="%{optflags}"
@@ -73,7 +74,7 @@
%check
mv photutils photutils.src
-%pytest_arch --pyargs photutils -rsxfE
+%pytest_arch -n auto --pyargs photutils -rsxfE
mv photutils.src photutils
%files %{python_files}
++++++ photutils-1.13.0.tar.gz -> photutils-2.0.2.tar.gz ++++++
++++ 49349 lines of diff (skipped)
