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here is the log from the commit of package python-photutils for
openSUSE:Factory checked in at 2024-07-11 20:33:22
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Comparing /work/SRC/openSUSE:Factory/python-photutils (Old)
and /work/SRC/openSUSE:Factory/.python-photutils.new.17339 (New)
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Package is "python-photutils"
Thu Jul 11 20:33:22 2024 rev:25 rq:1186836 version:1.13.0
Changes:
--------
--- /work/SRC/openSUSE:Factory/python-photutils/python-photutils.changes
2024-05-06 17:53:32.159704070 +0200
+++
/work/SRC/openSUSE:Factory/.python-photutils.new.17339/python-photutils.changes
2024-07-11 20:34:04.562823628 +0200
@@ -1,0 +2,144 @@
+Thu Jul 11 10:00:45 UTC 2024 - Ben Greiner <[email protected]>
+
+- Update to 1.13.0
+ ## General
+ * scikit-learn has been removed as an optional dependency.
+ [#1774]
+ ## New Features
+ ### photutils.datasets
+ * Added a make_model_image function for generating simulated
+ images with model sources. This function has more options and
+ is significantly faster than the now-deprecated
+ make_model_sources_image function. [#1759, #1790]
+ * Added a make_model_params function to make a table of randomly
+ generated model positions and fluxes for simulated sources.
+ [#1766, #1796]
+ ### photutils.detection
+ * The find_peaks function now supports input arrays with units.
+ [#1743]
+ * The Table returned from find_peaks now has an id column that
+ contains unique integer IDs for each peak. [#1743]
+ * The DAOStarFinder, IRAFStarFinder, and StarFinder classes now
+ support input arrays with units. [#1746]
+ ### photutils.profiles
+ * Added an unnormalize method to RadialProfile and CurveOfGrowth
+ to return the profile to the state before any normalize calls
+ were run. [#1732]
+ * Added calc_ee_from_radius and calc_radius_from_ee methods to
+ CurveOfGrowth. [#1733]
+ ### photutils.psf
+ * Added an include_localbkg keyword to the IterativePSFPhotometry
+ make_model_image and make_residual_image methods. [#1756]
+ * Added âx_fitâ, âxfitâ, ây_fitâ, âyfitâ, âflux_fitâ, and
+ âfluxfitâ as allowed column names in the init_params table
+ input to the PSF photometry objects. [#1765]
+ * Added a make_psf_model_image function to generate a simulated
+image from PSF models. [#1785, #1796] PSFPhotometry now has a new
+fit_params attribute containing a table of the fit model parameters
+and errors. [#1789]
+ * The PSFPhotometry and IterativePSFPhotometry init_params table
+ now allows the user to input columns for model parameters other
+ than x, y, and flux. The column names must match the parameter
+ names in the PSF model. They * can also be suffixed with
+ either the â_initâ or â_fitâ suffix. [#1793]
+ ## Bug Fixes
+ ### photutils.aperture
+ * Fixed an issue in ApertureStats where in very rare cases the
+ covariance calculation could take a long time. [#1788]
+ ### photutils.background
+ * No longer warn about NaNs in the data if those NaNs are masked
+ in coverage_mask passed to Background2D. [#1729]
+ ### photutils.psf
+ * Fixed an issue where IterativePSFPhotometry would fail if the
+ input data was a Quantity array. [#1746]
+ * Fixed the IntegratedGaussianPRF class bounding_box limits to
+ always be symmetric. [#1754]
+ * Fixed an issue where IterativePSFPhotometry could sometimes
+ issue a warning when merging tables if mode='all'. [#1761]
+ * Fixed a bug where the first matching column in the init_params
+ table was not used in PSFPhotometry and IterativePSFPhotometry.
+ [#1765]
+ * Fixed an issue where IterativePSFPhotometry could sometimes
+ raise an error about non-overlapping data. [#1778]
+ * Fixed an issue with unit handling in PSFPhotometry and
+ IterativePSFPhotometry. [#1792]
+ * Fixed an issue in IterativePSFPhotometry where the fit_results
+ attribute was not cleared between repeated calls. [#1793]
+ ### photutils.segmentation
+ * Fixed an issue in SourceCatalog where in very rare cases the
+ covariance calculation could take a long time. [#1788]
+ ## API Changes
+ * The photutils.test function has been removed. Instead use the
+ pytest --pyargs photutils command. [#1725]
+ ### photutils.datasets
+ * The photutils.datasets subpackage has been reorganized and the
+ make module has been deprecated. Instead of importing functions
+ from photutils.datasets.make, import functions from
+ photutils.datasets. [#1726]
+ * The make_model_sources_image function has been deprecated in
+ favor of the new make_model_image function. The new function
+ has more options and is significantly faster. [#1759]
+ * The randomly-generated optional noise in the simulated example
+ images make_4gaussians_image and make_100gaussians_image is now
+ slightly different. The noise sigma is the same, but the pixel
+ values differ. [#1760]
+ * The make_gaussian_prf_sources_image function is now deprecated.
+ Use the make_model_psf_image function or the new
+ make_model_image function instead. [#1762]
+ * The make_gaussian_sources_table function now includes an âidâ
+ column and always returns both 'flux' and 'amplitude' columns.
+ [#1763]
+ * The make_model_sources_table function now includes an âidâ
+ column. [#1764]
+ * The make_gaussian_sources_table function is now deprecated. Use
+ the make_model_sources_table function instead. [#1764]
+ * The make_test_psf_data function is now deprecated. Use the new
+ make_model_psf_image function instead. [#1785]
+ ### photutils.detection
+ * The sky keyword in DAOStarFinder and IRAFStarFinder is now
+ deprecated and will be removed in a future version. [#1747]
+ * Sources that have non-finite properties (e.g., centroid,
+ roundness, sharpness, etc.) are automatically excluded from the
+ output table in DAOStarFinder, IRAFStarFinder, and StarFinder.
+ [#1750]
+ ### photutils.psf
+PSFPhotometry and IterativePSFPhotometry now raise a ValueError if
+the input psf_model is not two-dimensional with n_inputs=2 and
+n_outputs=1. [#1741]
+ * The IntegratedGaussianPRF class bounding_box is now a method
+ instead of an attribute for consistency with Astropy models.
+ The method has a factor keyword to scale the bounding box. The
+ default scale factor is 5.5 times sigma. [#1754]
+ * The IterativePSFPhotometry make_model_image and
+ make_residual_image methods no longer include the local
+ background by default. This is a backwards-incompatible change.
+ If the previous behavior is desired, set *
+ include_localbkg=True. [#1756]
+ * IterativePSFPhotometry will now only issue warnings after all
+ iterations are completed. [#1767]
+ * The IterativePSFPhotometry psfphot attribute has been removed.
+ Instead, use the fit_results attribute, which contains a list
+ of PSFPhotometry instances for each fit iteration. [#1771]
+ * The group_size column has been moved to come immediately after
+ the group_id column in the output table from PSFPhotometry and
+ IterativePSFPhotometry. [#1772]
+ * The PSFPhotometry init_params table was moved from the
+fit_results dictionary to an attribute. [#1773] Removed local_bkg,
+psfcenter_indices, fit_residuals, npixfit, and nmodels keys from
+the PSFPhotometry fit_results dictionary. [#1773]
+ * Removed the deprecated BasicPSFPhotometry,
+ IterativelySubtractedPSFPhotometry, DAOPhotPSFPhotometry,
+ DAOGroup, DBSCANGroup, and GroupStarsBase, and NonNormalizable
+ classes and the prepare_psf_model, * get_grouped_psf_model,
+ and subtract_psf functions. [#1774]
+ * A ValueError is now raised if the shape of the error array does
+ not match the data array when calling the PSF-fitting classes.
+ [#1777]
+ * The fit_param_errs key was removed from the PSFPhotometry
+ fit_results dictionary. The fit parameter errors are now stored
+ in the fit_params table. [#1789]
+ * The cfit column in the PSFPhotometry and IterativePSFPhotometry
+ result table will now be NaN for sources whose initial central
+ pixel is masked. [#1789]
+
+-------------------------------------------------------------------
Old:
----
photutils-1.12.tar.gz
New:
----
photutils-1.13.0.tar.gz
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-photutils.spec ++++++
--- /var/tmp/diff_new_pack.yjVgiw/_old 2024-07-11 20:34:05.110843441 +0200
+++ /var/tmp/diff_new_pack.yjVgiw/_new 2024-07-11 20:34:05.114843586 +0200
@@ -16,15 +16,14 @@
#
-%define shortversion 1.12
Name: python-photutils
-Version: 1.12.0
+Version: 1.13.0
Release: 0
Summary: An Astropy package for photometry
License: BSD-3-Clause
Group: Productivity/Scientific/Astronomy
URL: https://github.com/astropy/photutils
-Source:
https://files.pythonhosted.org/packages/source/p/photutils/photutils-%{shortversion}.tar.gz
+Source:
https://files.pythonhosted.org/packages/source/p/photutils/photutils-%{version}.tar.gz
BuildRequires: %{python_module Cython >= 3 with %python-Cython < 3.1}
BuildRequires: %{python_module devel >= 3.9}
BuildRequires: %{python_module extension-helpers >= 1 with
%python-extension-helpers < 2}
@@ -43,7 +42,6 @@
Recommends: python-matplotlib >= 3.5
Recommends: python-rasterio
Recommends: python-scikit-image >= 0.19.0
-Recommends: python-scikit-learn >= 1.0
Recommends: python-scipy >= 1.7.2
Recommends: python-tqdm
# SECTION test requirements
@@ -53,7 +51,6 @@
BuildRequires: %{python_module matplotlib >= 3.5}
BuildRequires: %{python_module pytest-astropy >= 0.10}
BuildRequires: %{python_module scikit-image >= 0.19.0}
-BuildRequires: %{python_module scikit-learn >= 1.0}
BuildRequires: %{python_module scipy >= 1.7.2}
# /SECTION
%python_subpackages
@@ -63,7 +60,8 @@
and performing photometry of astronomical sources.
%prep
-%autosetup -p1 -n photutils-%{shortversion}
+%autosetup -p1 -n photutils-%{version}
+sed -i 's/--color=yes//' pyproject.toml
%build
export CFLAGS="%{optflags}"
@@ -74,14 +72,9 @@
%python_expand %fdupes %{buildroot}%{$python_sitearch}
%check
-# do not import source dir without extensions
-cd ..
-# Use astropy test suite logic. Calling pytest directly would require
-# duplicate in-place building of extensions.
-export PYTHONDONTWRITEBYTECODE=1
-%{python_expand export PYTHONPATH="%{buildroot}%{$python_sitearch}"
-$python -B -c "import photutils, sys; sys.exit(photutils.test(args=\"-v
-rsfEx\"))"
-}
+mv photutils photutils.src
+%pytest_arch --pyargs photutils -rsxfE
+mv photutils.src photutils
%files %{python_files}
%doc CHANGES.rst photutils/CITATION.rst README.rst
++++++ photutils-1.12.tar.gz -> photutils-1.13.0.tar.gz ++++++
++++ 20130 lines of diff (skipped)
