Hello community, here is the log from the commit of package hdf5 for openSUSE:Factory checked in at 2020-11-29 12:23:29 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Comparing /work/SRC/openSUSE:Factory/hdf5 (Old) and /work/SRC/openSUSE:Factory/.hdf5.new.5913 (New) ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "hdf5" Sun Nov 29 12:23:29 2020 rev:71 rq:851572 version:1.10.7 Changes: -------- --- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes 2020-11-24 22:09:31.911331647 +0100 +++ /work/SRC/openSUSE:Factory/.hdf5.new.5913/hdf5.changes 2020-11-29 12:23:48.745722062 +0100 @@ -5,2 +5,97 @@ - * https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.6/src/hdf5-1.10.6-RELEASE.txt - * https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.7/src/hdf5-1.10.7-RELEASE.txt + * Add metadata cache optimization to reduce skip list usage. + * Add BEST_EFFORT value to HDF5_USE_FILE_LOCKING environment variable. + * Add H5Pset/get_file_locking() API calls. + * Add Mirror VFD. + Use TCP/IP sockets to perform write-only (W/O) file I/O on a remote + machine. Must be used in conjunction with the Splitter VFD. + * Add Splitter VFD. + Maintain separate R/W and W/O channels for "concurrent" file writes + to two files using a single HDF5 file handle. + * Fixed an assertion failure in the parallel library when collectively + filling chunks. + * Fortran/C++ libs: Add wrappers for H5Pset/get_file_locking() API calls. + h5pget_file_locking_f() + h5pset_file_locking_f() + * Added new Fortran parameters: + H5F_LIBVER_ERROR_F + H5F_LIBVER_NBOUNDS_F + H5F_LIBVER_V18_F + H5F_LIBVER_V110_F + * Add new Fortran API: h5pget_libver_bounds_f. + * h5repack added options to control how external links are handled. + * The tools library was updated by standardizing the error stack process. + * The H5DSis_scale function was updated to return "not a dimension scale" (0) + instead of failing (-1), when CLASS or DIMENSION_SCALE attributes are + not written according to Dimension Scales Specification. + * Bug Fixes: + + Fix bug and simplify collective metadata write operation when some ranks + have no entries to contribute. This fixes parallel regression test + failures with IBM SpectrumScale MPI on the Summit system at ORNL. + + Fixed use-of-uninitialized-value error. + Appropriate initialization of local structs was added to remove the + use-of-uninitialized-value errors reported by MemorySanitizer. + + Creation of dataset with optional filter. + A fix is applied to allow the creation of a dataset in such + situation, as specified in the user documentation. + + Explicitly declared dlopen to use RTLD_LOCAL. + + H5Sset_extent_none() sets the dataspace class to H5S_NO_CLASS which + causes asserts/errors when passed to other dataspace API calls. + + Fixed the segmentation fault when reading attributes with multiple threads + The problem was fixed by setting the file pointer to the current opened + file pointer when the attribute was accessed. Similar patch up was done + before when reading dataset with variable length string datatype. + + Don't allocate an empty (0-dimensioned) chunked dataset's chunk + index, until the dataset's dimensions are increased. + + Fortan: Corrected INTERFACE INTENT(IN) to INTENT(OUT) for buf_size in + h5fget_file_image_f. + + h5diff fixed a command line parsing error. + + h5diff added a command line option to ignore attributes. + + h5diff added another level to the verbose argument to print filenames. + + h5repack was fixed to repack the reference attributes properly. + * For details check: + https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.7/src/hdf5-1.10.7-RELEASE.txt +- version 1.10.6 + * Added S3 and HDFS Virtual File Drivers (VFDs) to HDF5. + Instructions to enable them when configuring HDF5 on Linux and Mac + may be found at. + https://portal.hdfgroup.org/display/HDF5/Virtual+File+Drivers+-+S3+and+HDFS. + * Added new wrappers for H5Pset/get_create_intermediate_group() + LinkCreatPropList::setCreateIntermediateGroup() + LinkCreatPropList::getCreateIntermediateGroup() + * h5repack was fixed to repack datasets with external storage + to other types of storage. + * Bug Fixes: + + Improved performance when creating a large number of small datasets by + retrieving default property values from the API context instead of doing + skip list searches. More work is required to achieve parity with HDF5 1.8. + + Fixed user-created data access properties not existing in the property list + returned by H5Dget_access_plist. Thanks to Steven Varga for submitting a + reproducer and a patch. + + Inappropriate linking with deprecated MPI C++ libraries. + HDF5 does not define *_SKIP_MPICXX in the public headers, so applications + can inadvertently wind up linking to the deprecated MPI C++ wrappers. + MPICH_SKIP_MPICXX and OMPI_SKIP_MPICXX have both been defined in H5public.h + so this should no longer be an issue. HDF5 makes no use of the deprecated + MPI C++ wrappers. + + fcntl(2)-based file locking incorrectly passed the lock argument struct + instead of a pointer to the struct, causing errors on systems where + flock(2) is not available. + This bug affects HDF5 1.10.0 through 1.10.5. + fcntl(2)-based file locking now correctly passes the struct pointer. + + Fixed a bug caused by a bad tag value when condensing object header + messages. + + Fixed an issue when creating a file with non-default file space info + together with library high bound setting to H5F_LIBVER_V18. + This was fixed by setting and checking the proper version in the file + space info message based on the library low and high bounds when creating + and opening the HDF5 file. + + Fixed an issue where copying a version 1.8 dataset between files using + H5Ocopy fails due to an incompatible fill version. + + Fixed a bug that would cause an error or cause fill values to be + incorrectly read from a chunked dataset using the "single chunk" index if + + Fixed a bug that could cause an error or cause fill values to be + incorrectly read from a dataset that was written to using H5Dwrite_chunk + if the dataset was not closed after writing. + + Fixed memory leak in scale offset filter. + * For details check: + https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.6/src/hdf5-1.10.6-RELEASE.txt ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Other differences: ------------------ _______________________________________________ openSUSE Commits mailing list -- [email protected] To unsubscribe, email [email protected] List Netiquette: https://en.opensuse.org/openSUSE:Mailing_list_netiquette List Archives: https://lists.opensuse.org/archives/list/[email protected]
