Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-biopython for
openSUSE:Factory checked in at 2021-02-21 22:14:31
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/python-biopython (Old)
and /work/SRC/openSUSE:Factory/.python-biopython.new.28504 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python-biopython"
Sun Feb 21 22:14:31 2021 rev:7 rq:874102 version:1.78
Changes:
--------
--- /work/SRC/openSUSE:Factory/python-biopython/python-biopython.changes
2020-11-04 18:31:57.384205692 +0100
+++
/work/SRC/openSUSE:Factory/.python-biopython.new.28504/python-biopython.changes
2021-02-21 22:14:38.854120611 +0100
@@ -1,0 +2,22 @@
+Sat Feb 20 19:29:23 UTC 2021 - andy great <[email protected]>
+
+- Update to version 1.7.8.
+ * The main change is that Bio.Alphabet is no longer used. In some
+ cases you will now have to specify expected letters, molecule
+ type (DNA, RNA, protein), or gap character explicitly.
+ * Bio.SeqIO.parse() is faster with "fastq" format due to small
+ improvements in the Bio.SeqIO.QualityIO module.
+ * The SeqFeature object's .extract() method can now be used for
+ trans-spliced locations via an optional dictionary of references.
+ * As in recent releases, more of our code is now explicitly
+ available under either our original "Biopython License Agreement",
+ or the very similar but more commonly used "3-Clause BSD License".
+ See the LICENSE.rst file for more details.
+ * Additionally, a number of small bugs and typos have been fixed
+ with additions to the test suite. There has been further work to
+ follow the Python PEP8, PEP257 and best practice standard coding
+ style, and all of the tests have been reformatted with the black
+ tool to match the main code base.
+- Skip python36 because numpy no longer support it.
+
+-------------------------------------------------------------------
Old:
----
biopython-1.77.tar.gz
New:
----
biopython-1.78.tar.gz
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-biopython.spec ++++++
--- /var/tmp/diff_new_pack.g2NLoP/_old 2021-02-21 22:14:39.418121206 +0100
+++ /var/tmp/diff_new_pack.g2NLoP/_new 2021-02-21 22:14:39.418121206 +0100
@@ -1,7 +1,7 @@
#
# spec file for package python-biopython
#
-# Copyright (c) 2020 SUSE LLC
+# Copyright (c) 2021 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -20,8 +20,9 @@
# Tests require a network connection
%bcond_with test
%define skip_python2 1
+%define skip_python36 1
Name: python-biopython
-Version: 1.77
+Version: 1.78
Release: 0
Summary: Python Tools for Computational Molecular Biology
License: MIT AND BSD-3-Clause
@@ -54,7 +55,6 @@
%prep
%setup -q -n biopython-%{version}
find -type f -name "*.py" -exec sed -i '/^#![ ]*\/usr\/bin\/.*$/ d' {}
2>/dev/null ';'
-sed -i '/^#![ ]*\/usr\/bin\/.*$/ d' Scripts/Structure/hsexpo
# Example scripts cannot be in a subdirectory
mv -v Doc/examples examples
++++++ biopython-1.77.tar.gz -> biopython-1.78.tar.gz ++++++
/work/SRC/openSUSE:Factory/python-biopython/biopython-1.77.tar.gz
/work/SRC/openSUSE:Factory/.python-biopython.new.28504/biopython-1.78.tar.gz
differ: char 5, line 1
