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here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2024-09-17 18:17:25
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.29891 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python-scipy"
Tue Sep 17 18:17:25 2024 rev:76 rq:1199463 version:1.14.1
Changes:
--------
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2024-07-17 15:14:54.773544359 +0200
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.29891/python-scipy.changes
2024-09-17 18:17:27.645155590 +0200
@@ -1,0 +2,13 @@
+Fri Sep 6 18:26:08 UTC 2024 - Ben Greiner <c...@bnavigator.de>
+
+- Add scipy-pybind11-2.13.patch gh#scipy/scipy#21199
+- Rename 21063.patch to scipy-pr21063-gcc14.patch
+
+-------------------------------------------------------------------
+Sat Aug 31 08:54:54 UTC 2024 - Ben Greiner <c...@bnavigator.de>
+
+- Update to SciPy 1.14.1
+ * Add support for Python 3.13
+ * Bug-fix release with no new features compared to 1.14.0.
+
+-------------------------------------------------------------------
Old:
----
21063.patch
scipy-1.14.0.tar.gz
New:
----
scipy-1.14.1.tar.gz
scipy-pr21063-gcc14.patch
scipy-pybind11-2.13.patch
BETA DEBUG BEGIN:
Old:- Add scipy-pybind11-2.13.patch gh#scipy/scipy#21199
- Rename 21063.patch to scipy-pr21063-gcc14.patch
BETA DEBUG END:
BETA DEBUG BEGIN:
New:- Add scipy-pybind11-2.13.patch gh#scipy/scipy#21199
- Rename 21063.patch to scipy-pr21063-gcc14.patch
New:
- Add scipy-pybind11-2.13.patch gh#scipy/scipy#21199
- Rename 21063.patch to scipy-pr21063-gcc14.patch
BETA DEBUG END:
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-scipy.spec ++++++
--- /var/tmp/diff_new_pack.JuDnl3/_old 2024-09-17 18:17:29.913249549 +0200
+++ /var/tmp/diff_new_pack.JuDnl3/_new 2024-09-17 18:17:29.917249715 +0200
@@ -93,7 +93,7 @@
# TODO explore debundling Boost for standard and hpc
Name: %{package_name}
-Version: 1.14.0
+Version: 1.14.1
Release: 0
Summary: Scientific Tools for Python
License: BSD-3-Clause AND LGPL-2.0-or-later AND BSL-1.0
@@ -101,13 +101,15 @@
Source0:
https://files.pythonhosted.org/packages/source/s/scipy/scipy-%{version}.tar.gz
# Create with pooch: `python3
scipy-%%{version}/scipy/datasets/_download_all.py scipy-datasets/scipy-data;
tar czf scipy-datasets.tar.gz scipy-datasets`
Source1: scipy-datasets.tar.gz
-# PATCH-FIX-UPSTREAM - MAINT: gcc-14 test_region5 tol bump
-Patch: https://github.com/scipy/scipy/pull/21063.patch
+# PATCH-FIX-UPSTREAM scipy-pr21063-gcc14.patch gh#scipy/scipy#21063 - MAINT:
gcc-14 test_region5 tol bump
+Patch0:
https://github.com/scipy/scipy/pull/21063.patch#/scipy-pr21063-gcc14.patch
+# PATCH-FIX-UPSTREAM scipy-pybind11-2.13.patch gh#scipy/scipy#21199 -- commit
1ea9f1dc0ac4e871b7a54a8f3b12a01ac7d5f3d7
+Patch1: scipy-pybind11-2.13.patch
BuildRequires: %{python_module Cython >= 3.0.8 with %python-Cython < 3.1}
BuildRequires: %{python_module devel >= 3.9}
BuildRequires: %{python_module meson-python >= 0.15.0 with
%python-meson-python < 0.18}
BuildRequires: %{python_module pip}
-BuildRequires: %{python_module pybind11-devel >= 2.12 with
%python-pybind11-devel < 2.13}
+BuildRequires: %{python_module pybind11-devel >= 2.13.1 with
%python-pybind11-devel < 2.14}
# Upstream's pre-emptive pin to < 0.16 is not necessary
BuildRequires: %{python_module pythran >= 0.14 with %python-pythran < 0.17}
BuildRequires: fdupes
++++++ scipy-1.14.0.tar.gz -> scipy-1.14.1.tar.gz ++++++
/work/SRC/openSUSE:Factory/python-scipy/scipy-1.14.0.tar.gz
/work/SRC/openSUSE:Factory/.python-scipy.new.29891/scipy-1.14.1.tar.gz differ:
char 5, line 1
++++++ scipy-pr21063-gcc14.patch ++++++
>From c485c78ae3918ed26d4c1208e77b029a7f918f0d Mon Sep 17 00:00:00 2001
From: Tyler Reddy <tyler.je.re...@gmail.com>
Date: Thu, 27 Jun 2024 09:56:23 -0600
Subject: [PATCH] MAINT: gcc-14 test_region5 tol bump
* Fixes #21059
* A small tolerance bump in `TestHyp2f1.test_region5` needed for one
its test cases to pass when compiling SciPy with gcc-14 series.
[ci skip] [skip ci]
---
scipy/special/tests/test_hyp2f1.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/scipy/special/tests/test_hyp2f1.py
b/scipy/special/tests/test_hyp2f1.py
index 6c2f6ec103bf..adef4e2584c8 100644
--- a/scipy/special/tests/test_hyp2f1.py
+++ b/scipy/special/tests/test_hyp2f1.py
@@ -2093,7 +2093,7 @@ def test_region4(self, hyp2f1_test_case):
c=-15.5,
z=(0.3413793103448277-0.9482758620689655j),
expected=(-1.0509834850116921-1.1145522325486075j),
- rtol=1e-14,
+ rtol=1.1e-14,
),
),
pytest.param(
++++++ scipy-pybind11-2.13.patch ++++++
>From 1ea9f1dc0ac4e871b7a54a8f3b12a01ac7d5f3d7 Mon Sep 17 00:00:00 2001
From: Ralf Gommers <ralf.gomm...@gmail.com>
Date: Tue, 16 Jul 2024 17:49:38 +0200
Subject: [PATCH] BLD: bump minimum pybind11 version to 2.13.1, mark
pypocketfft as safe without GIL
---
pyproject.toml | 2 +-
requirements/build.txt | 2 +-
scipy/fft/_pocketfft/pypocketfft.cxx | 3 ++-
scipy/meson.build | 2 +-
4 files changed, 5 insertions(+), 4 deletions(-)
Index: scipy-1.14.1/requirements/build.txt
===================================================================
--- scipy-1.14.1.orig/requirements/build.txt
+++ scipy-1.14.1/requirements/build.txt
@@ -2,7 +2,7 @@
# Do not edit this file; modify `pyproject.toml` instead and run `python
tools/generate_requirements.py`.
meson-python>=0.15.0
Cython>=3.0.8
-pybind11>=2.12.0
+pybind11>=2.13.1
pythran>=0.14.0
ninja
numpy>=1.23.5
Index: scipy-1.14.1/scipy/fft/_pocketfft/pypocketfft.cxx
===================================================================
--- scipy-1.14.1.orig/scipy/fft/_pocketfft/pypocketfft.cxx
+++ scipy-1.14.1/scipy/fft/_pocketfft/pypocketfft.cxx
@@ -12,6 +12,7 @@
* \author Peter Bell
*/
+// Note: do not reorder, pybind11.h must come first (it includes Python.h)
#include <pybind11/pybind11.h>
#include <pybind11/numpy.h>
#include <pybind11/stl.h>
@@ -756,7 +757,7 @@ out : int
} // unnamed namespace
-PYBIND11_MODULE(pypocketfft, m)
+PYBIND11_MODULE(pypocketfft, m, py::mod_gil_not_used())
{
using namespace pybind11::literals;
Index: scipy-1.14.1/scipy/meson.build
===================================================================
--- scipy-1.14.1.orig/scipy/meson.build
+++ scipy-1.14.1/scipy/meson.build
@@ -83,7 +83,7 @@ fortranobject_c = incdir_f2py / 'fortran
npymath_path = _incdir_numpy_abs / '..' / 'lib'
npymath_lib = cc.find_library('npymath', dirs: npymath_path)
-pybind11_dep = dependency('pybind11', version: '>=2.12.0')
+pybind11_dep = dependency('pybind11', version: '>=2.13.1')
# Pythran include directory and build flags
if use_pythran
Index: scipy-1.14.1/pyproject.toml
===================================================================
--- scipy-1.14.1.orig/pyproject.toml
+++ scipy-1.14.1/pyproject.toml
@@ -24,7 +24,7 @@ requires = [
# The upper bound on Cython is pre-emptive only
"Cython>=3.0.8,<3.1.0", # when updating version, also update check
in meson.build
# The upper bound on pybind11 is pre-emptive only
- "pybind11>=2.12.0,<2.13.0", # when updating version, also update check
in scipy/meson.build
+ "pybind11>=2.13.1,<2.14.0", # when updating version, also update check
in scipy/meson.build
# The upper bound on pythran is pre-emptive only; 0.16.1
# is released/working at time of writing.
"pythran>=0.14.0,<0.17.0",
