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Hello community,
here is the log from the commit of package openmpi4 for openSUSE:Factory
checked in at 2021-05-02 18:35:56
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/openmpi4 (Old)
and /work/SRC/openSUSE:Factory/.openmpi4.new.1947 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "openmpi4"
Sun May 2 18:35:56 2021 rev:6 rq:889565 version:4.1.1
Changes:
--------
--- /work/SRC/openSUSE:Factory/openmpi4/openmpi4.changes 2021-04-01
14:18:50.776119418 +0200
+++ /work/SRC/openSUSE:Factory/.openmpi4.new.1947/openmpi4.changes
2021-05-02 18:36:40.184806241 +0200
@@ -1,0 +2,72 @@
+Wed Apr 28 11:08:54 UTC 2021 - Nicolas Morey-Chaisemartin
<nmoreychaisemar...@suse.com>
+
+- openmpi4 is now the default openmpi for releases > 15.3
+- Add orted-mpir-add-version-to-shared-library.patch to fix unversionned
library
+- Change RPM macros install path to %{_rpmmacrodir}
+
+-------------------------------------------------------------------
+Wed Apr 28 09:24:33 UTC 2021 - Nicolas Morey-Chaisemartin
<nmoreychaisemar...@suse.com>
+
+- Update to version 4.1.1
+ - Fix a number of datatype issues, including an issue with
+ improper handling of partial datatypes that could lead to
+ an unexpected application failure.
+ - Change UCX PML to not warn about MPI_Request leaks during
+ MPI_FINALIZE by default. The old behavior can be restored with
+ the mca_pml_ucx_request_leak_check MCA parameter.
+ - Reverted temporary solution that worked around launch issues in
+ SLURM v20.11.{0,1,2}. SchedMD encourages users to avoid these
+ versions and to upgrade to v20.11.3 or newer.
+ - Updated PMIx to v3.2.2.
+ - Disabled gcc built-in atomics by default on aarch64 platforms.
+ - Disabled UCX PML when UCX v1.8.0 is detected. UCX version 1.8.0 has a bug
that
+ may cause data corruption when its TCP transport is used in conjunction
with
+ the shared memory transport. UCX versions prior to v1.8.0 are not affected
by
+ this issue. Thanks to @ksiazekm for reporting the issue.
+ - Fixed detection of available UCX transports/devices to better inform PML
+ prioritization.
+ - Fixed SLURM support to mark ORTE daemons as non-MPI tasks.
+ - Improved AVX detection to more accurately detect supported
+ platforms. Also improved the generated AVX code, and switched to
+ using word-based MCA params for the op/avx component (vs. numeric
+ big flags).
+ - Improved OFI compatibility support and fixed memory leaks in error
+ handling paths.
+ - Improved HAN collectives with support for Barrier and Scatter. Thanks
+ to @EmmanuelBRELLE for these changes and the relevant bug fixes.
+ - Fixed MPI debugger support (i.e., the MPIR_Breakpoint() symbol).
+ Thanks to @louisespellacy-arm for reporting the issue.
+ - Fixed ORTE bug that prevented debuggers from reading MPIR_Proctable.
+ - Removed PML uniformity check from the UCX PML to address performance
+ regression.
+ - Fixed MPI_Init_thread(3) statement about C++ binding and update
+ references about MPI_THREAD_MULTIPLE. Thanks to Andreas L??sel for
+ bringing the outdated docs to our attention.
+ - Added fence_nb to Flux PMIx support to address segmentation faults.
+ - Ensured progress of AIO requests in the POSIX FBTL component to
+ prevent exceeding maximum number of pending requests on MacOS.
+ - Used OPAL's mutli-thread support in the orted to leverage atomic
+ operations for object refcounting.
+ - Fixed segv when launching with static TCP ports.
+ - Fixed --debug-daemons mpirun CLI option.
+ - Fixed bug where mpirun did not honor --host in a managed job
+ allocation.
+ - Made a managed allocation filter a hostfile/hostlist.
+ - Fixed bug to marked a generalized request as pending once initiated.
+ - Fixed external PMIx v4.x check.
+ - Fixed OSHMEM build with `--enable-mem-debug`.
+ - Fixed a performance regression observed with older versions of GCC when
+ __ATOMIC_SEQ_CST is used. Thanks to @BiplabRaut for reporting the issue.
+ - Fixed buffer allocation bug in the binomial tree scatter algorithm when
+ non-contiguous datatypes are used. Thanks to @sadcat11 for reporting the
issue.
+ - Fixed bugs related to the accumulate and atomics functionality in the
+ osc/rdma component.
+ - Fixed race condition in MPI group operations observed with
+ MPI_THREAD_MULTIPLE threading level.
+ - Fixed a deadlock in the TCP BTL's connection matching logic.
+ - Fixed pml/ob1 compilation error when CUDA support is enabled.
+ - Fixed a build issue with Lustre caused by unnecessary header includes.
+ - Fixed a build issue with IMB LSF workload manager.
+ - Fixed linker error with UCX SPML.
+
+-------------------------------------------------------------------
Old:
----
openmpi-4.1.0.0.9ac5471035.tar.bz2
New:
----
openmpi-4.1.1.0.a8dd8708d8b6.tar.bz2
orted-mpir-add-version-to-shared-library.patch
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ openmpi4.spec ++++++
--- /var/tmp/diff_new_pack.g8D53G/_old 2021-05-02 18:36:40.816803548 +0200
+++ /var/tmp/diff_new_pack.g8D53G/_new 2021-05-02 18:36:40.820803531 +0200
@@ -42,8 +42,8 @@
# % define build_static_devel 1
%define pname openmpi
-%define vers 4.1.0
-%define _vers 4_1_0
+%define vers 4.1.1
+%define _vers 4_1_1
%define m_f_ver 4
%bcond_with ringdisabled
@@ -104,7 +104,11 @@
%endif
# Detect whether we are the default openMPI implemantation or not
+%if "%{flavor}" == "standard" && (%{suse_version} > 1500 || 0%{?sle_version} >
150300)
+%define default_openmpi 1
+%else
%define default_openmpi 0
+%endif
%if %{with hpc}
%{!?compiler_family:%global compiler_family gnu}
@@ -115,7 +119,7 @@
%global hpc_openmpi_pack_version %{hpc_openmpi_dep_version}
%endif
-%define git_ver .0.9ac5471035
+%define git_ver .0.a8dd8708d8b6
#############################################################################
#
@@ -135,6 +139,7 @@
Source3: macros.hpc-openmpi
Source4: mpivars.sh
Source5: mpivars.csh
+Patch1: orted-mpir-add-version-to-shared-library.patch
Provides: mpi
BuildRoot: %{_tmppath}/%{name}-%{version}-build
BuildRequires: autoconf
@@ -393,6 +398,7 @@
echo without HPC
%endif
%setup -q -n openmpi-%{version}%{git_ver}
+%patch1
%if %{without hpc}
cat > %{_sourcedir}/baselibs.conf <<EOF
@@ -533,8 +539,8 @@
EOF
-mkdir -p %{buildroot}%{_sysconfdir}/rpm
-cat <<EOF >%{buildroot}%{_sysconfdir}/rpm/macros.openmpi
+mkdir -p %{buildroot}%{_rpmmacrodir}
+cat <<EOF >%{buildroot}%{_rpmmacrodir}/macros.openmpi
#
# openmpi
#
@@ -580,9 +586,9 @@
sed -e "s/export/setenv/" -e "s/=/ /" \
%{buildroot}/%{mpi_bindir}/mpivars.sh > \
%{buildroot}/%{mpi_bindir}/mpivars.csh
-mkdir -p %{buildroot}%{_sysconfdir}/rpm
-mkdir -p %{buildroot}%{_sysconfdir}/rpm
-cp %{S:3} %{buildroot}%{_sysconfdir}/rpm
+mkdir -p %{buildroot}%{_rpmmacrodir}
+mkdir -p %{buildroot}%{_rpmmacrodir}
+cp %{S:3} %{buildroot}%{_rpmmacrodir}
# Drop the files that should go into %{pname}-config as we only package them
# in the non HPC build
@@ -730,9 +736,9 @@
%files macros-devel
%defattr(-,root,root,-)
%if %{with hpc}
-%config %{_sysconfdir}/rpm/macros.hpc-openmpi
+%{_rpmmacrodir}/macros.hpc-openmpi
%else
-%config %{_sysconfdir}/rpm/macros.openmpi
+%{_rpmmacrodir}/macros.openmpi
%endif
%if 0%{?build_static_devel}
++++++ _service ++++++
--- /var/tmp/diff_new_pack.g8D53G/_old 2021-05-02 18:36:40.880803275 +0200
+++ /var/tmp/diff_new_pack.g8D53G/_new 2021-05-02 18:36:40.884803259 +0200
@@ -8,7 +8,7 @@
<param name="versionformat">@PARENT_TAG@.@TAG_OFFSET@.%h</param>
<param name="versionrewrite-pattern">v(.*)</param>
<param name="versionrewrite-replacement">\1</param>
- <param name="revision">9ac5471035b9066462506bc4d92be7a340a8058e</param>
+ <param name="revision">a8dd8708d8b6d1346328d7f4612d63b307c25653</param>
</service>
<service name="recompress" mode="disabled">
<param name="file">openmpi*.tar</param>
++++++ openmpi-4.1.0.0.9ac5471035.tar.bz2 ->
openmpi-4.1.1.0.a8dd8708d8b6.tar.bz2 ++++++
/work/SRC/openSUSE:Factory/openmpi4/openmpi-4.1.0.0.9ac5471035.tar.bz2
/work/SRC/openSUSE:Factory/.openmpi4.new.1947/openmpi-4.1.1.0.a8dd8708d8b6.tar.bz2
differ: char 11, line 1
++++++ orted-mpir-add-version-to-shared-library.patch ++++++
commit bd2ceac4315c772e02cbb070e443d1acf2512da1
Author: Andrew J. Hesford <a...@sideband.org>
Date: Thu Apr 29 15:13:23 2021 -0400
orted-mpir: add version to shared library
Because orted-mpir is installed in the public library direrctory, it
should have a version. Assign the library libopen_rte_so_version to be
consistent with the rest of the RTE.
Signed-off-by: Andrew J. Hesford <a...@sideband.org>
diff --git orte/orted/orted-mpir/Makefile.am orte/orted/orted-mpir/Makefile.am
index 5c0dd335644a..8105dd4a6b83 100644
--- orte/orted/orted-mpir/Makefile.am
+++ orte/orted/orted-mpir/Makefile.am
@@ -19,4 +19,4 @@ lib_LTLIBRARIES = lib@orte_lib_pre...@open-orted-mpir.la
lib@ORTE_LIB_PREFIX@open_orted_mpir_la_SOURCES = \
orted_mpir_breakpoint.c \
orted_mpir.h
-lib@ORTE_LIB_PREFIX@open_orted_mpir_la_LDFLAGS = -avoid-version
+lib@ORTE_LIB_PREFIX@open_orted_mpir_la_LDFLAGS = -version-info
$(libopen_rte_so_version)
