Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-h5py for openSUSE:Factory
checked in at 2021-09-09 23:07:50
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/python-h5py (Old)
and /work/SRC/openSUSE:Factory/.python-h5py.new.1899 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python-h5py"
Thu Sep 9 23:07:50 2021 rev:21 rq:917807 version:3.4.0
Changes:
--------
--- /work/SRC/openSUSE:Factory/python-h5py/python-h5py.changes 2021-06-25
15:02:14.492217710 +0200
+++ /work/SRC/openSUSE:Factory/.python-h5py.new.1899/python-h5py.changes
2021-09-09 23:08:22.700889047 +0200
@@ -1,0 +2,23 @@
+Thu Sep 9 16:08:42 UTC 2021 - Matej Cepl <mc...@suse.com>
+
+- Correct order of definitions to generate multiple packages for
+ multiple builds.
+
+-------------------------------------------------------------------
+Sun Sep 5 16:38:52 UTC 2021 - Arun Persaud <a...@gmx.de>
+
+- update to version 3.4.0:
+ * New features
+ + The pre-built wheels now bundle HDF5 1.12.1 (:pr:`1945`).
+ + len() now works on dset.astype(), .asstr() and .fields()
+ wrappers (:pr:`1913`).
+ * Bug fixes
+ + Fix bug introduced in version 3.3 that did not allow the
+ creation of files using the flag "a" for certain drivers
+ (e.g. mpiio, core and stdio) (:pr:`1922`).
+ + Dataset indexing will now use the optimized fast path, which was
+ accidentally disabled in a previous version (:pr:`1944`).
+ + Fix an error building with Cython 3.0 alpha 8 (cpdef inside
+ functions) (:pr:`1923`).
+
+-------------------------------------------------------------------
Old:
----
h5py-3.3.0.tar.gz
New:
----
h5py-3.4.0.tar.gz
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-h5py.spec ++++++
--- /var/tmp/diff_new_pack.X4vHSq/_old 2021-09-09 23:08:23.072889478 +0200
+++ /var/tmp/diff_new_pack.X4vHSq/_new 2021-09-09 23:08:23.076889483 +0200
@@ -17,9 +17,10 @@
%global flavor @BUILD_FLAVOR@%{nil}
-
%define pname python-h5py
-
+%{?!python_module:%define python_module() python-%{**} python3-%{**}}
+%define skip_python2 1
+%define skip_python36 1
# SECTION MPI DEFINITIONS
%if "%{flavor}" == "openmpi1"
%global mpi_flavor openmpi
@@ -29,17 +30,14 @@
%define mpi_vers 1
%endif
%endif
-
%if "%{flavor}" == "openmpi2"
%global mpi_flavor openmpi
%define mpi_vers 2
%endif
-
%if "%{flavor}" == "openmpi3"
%global mpi_flavor openmpi
%define mpi_vers 3
%endif
-
%if "%{flavor}" == "openmpi4"
%global mpi_flavor openmpi
%define mpi_vers 4
@@ -64,12 +62,8 @@
%define my_sitearch_in_expand %{$python_sitearch}
%endif
# /SECTION MPI DEFINITIONS
-
-%{?!python_module:%define python_module() python-%{**} python3-%{**}}
-%define skip_python2 1
-%define skip_python36 1
Name: %{pname}%{?my_suffix}
-Version: 3.3.0
+Version: 3.4.0
Release: 0
Summary: Python interface to the Hierarchical Data Format library
License: BSD-3-Clause
@@ -93,6 +87,7 @@
BuildRequires: %{python_module numpy-devel >= 1.17.5 if (%python-base >= 3.8)}
BuildRequires: %{python_module numpy-devel >= 1.19.3 if (%python-base >= 3.9)}
Requires: hdf5%{?my_suffix}
+%requires_eq libhdf5%{?my_suffix}
%if 0%{python_version_nodots} >= 39
Requires: python-numpy >= 1.19.3
%else
@@ -102,8 +97,7 @@
Requires: python-numpy >= 1.12
%endif
%endif
-%requires_eq libhdf5%{?my_suffix}
-%if %python_version_nodots < 38
+%if %{python_version_nodots} < 38
Requires: python-cached-property
%endif
%if %{with mpi}
++++++ h5py-3.3.0.tar.gz -> h5py-3.4.0.tar.gz ++++++
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/AUTHORS new/h5py-3.4.0/AUTHORS
--- old/h5py-3.3.0/AUTHORS 2021-06-22 14:06:03.000000000 +0200
+++ new/h5py-3.4.0/AUTHORS 1970-01-01 01:00:00.000000000 +0100
@@ -1,172 +0,0 @@
-All of the people who have made at least one contribution to h5py.
-Authors are sorted by number of commits.
-
-* Andrew Collette
-* Thomas Kluyver
-* Thomas A Caswell
-* James Tocknell
-* Jerome Kieffer
-* Chen
-* Aleksandar Jelenak
-* ???????????? ??????????????????
-* Darren Dale
-* Henri Payno
-* Thomas VINCENT
-* Pierlauro Sciarelli
-* Anthony Scopatz
-* Valentin Valls
-* Satrajit Ghosh
-* Ulrik Kofoed Pedersen
-* Stan West
-* Martin Raspaud
-* John Kirkham
-* Aaron Parsons
-* Julia Garriga Ferrer
-* Jerome Kieffer
-* Hameer Abbasi
-* Cyril Danilevski
-* John Readey
-* Lawrence Chan
-* V. Armando Sol??
-* Andrey Paramonov
-* Yu Feng
-* Liu JiaLin
-* lhole
-* Ghislain Antony Vaillant
-* Seth R Johnson
-* Matthieu Brucher
-* Andrea Bedini
-* Martin Teichmann
-* Markus Gerstel
-* Axel Huebl
-* Pierre de Buyl
-* miketrumpis
-* Vladimir Brankov
-* Bruce Merry
-* Samuel Dowling
-* Florian Rathgeber
-* Chris Billington
-* Max Dietz
-* Silas-Asamoah
-* tmichela
-* Anna Padee
-* nitrocalcite
-* Orion Poplawski
-* Dieter Weber
-* Konrad Hinsen
-* Toon Verstraelen
-* Antony Lee
-* Machine User
-* Geoff Wright
-* Jordan Farquhar
-* Clemens Weninger
-* Robin De Schepper
-* aporter
-* Kai Muehlbauer
-* Thomas Donoghue
-* Kit Choi
-* lucasb-eyer
-* Matthew Brett
-* Dylan Nelson
-* Scott Sanderson
-* Matt Zwier
-* Charles Law
-* Chen Yufei
-* Simon Mutch
-* Christian Sachs
-* ebner
-* egachen
-* Gary Yendell
-* Kacper Kowalik
-* Yaroslav Halchenko
-* Sajid Ali
-* Noel Dawe
-* John Tyree
-* Christoph Gohlke
-* Carlos Pascual
-* Joe Jevnik
-* unknown
-* Jason Newton
-* Will Parkin
-* Devin
-* Nathan Goldbaum
-* paulmueller
-* Andy Salnikov
-* amcnicho
-* Jonah Bernhard
-* Antoine Pitrou
-* Joseph Kleinhenz
-* cclauss
-* Colin Gavin
-* Chris Meyer
-* Jakob Lombacher
-* Michael Boyle
-* Sam Mason
-* Peter H. Li
-* jialin
-* Alex Porter
-* jhofinger
-* Aaron Meurer
-* Guinnes Singh
-* Jonathan Okasinski
-* mattip
-* Daniel Berke
-* joydeep bhattacharjee
-* pharshalp
-* Matthias Geier
-* Eric Larson
-* Drew Parsons
-* Robert David Grant
-* JP Dehollain
-* chrisjbillington
-* Lars Viklund
-* Dan Guest
-* root
-* bpinsard
-* Barry Wardel
-* Evan Wright
-* Johannes Meixner
-* Marc Abramowitz
-* syhw
-* Stuart Berg
-* Michael V. DePalatis
-* Kwat
-* Mike Boyle
-* Peter Chang
-* Mikhail
-* Nils Werner
-* Peter Hill
-* John Benediktsson
-* Yuri D'Elia
-* Matthew Turk
-* Bradley M. Froehle
-* Dan Meliza
-* Artem Sanakoev
-* Matthias K??nig
-* Adam J. Stewart
-* Kyle Sunden
-* Caleb Morse
-* Peter Colberg
-* James Clarke
-* Sam Toyer
-* Joe Zuntz
-* Greg Allen
-* Lawrence Mitchell
-* dkriegner
-* Jens Timmerman
-* Niru Maheswaranathan
-* Paco Hope
-* Felix Yan
-* Alex Migon
-* Lisandro Dalcin
-* Alexei Colin
-* Marco Paolini
-* pierlauro
-* Philipp A
-* Csaba Kert??sz
-* Thomas Michelat
-* Luke Tudge
-* Gang Chen
-* patiencedaur
-* Tim Gates
-* Micha?? G??rny
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/PKG-INFO new/h5py-3.4.0/PKG-INFO
--- old/h5py-3.3.0/PKG-INFO 2021-06-22 14:25:32.937909600 +0200
+++ new/h5py-3.4.0/PKG-INFO 2021-08-23 10:31:52.000000000 +0200
@@ -1,6 +1,6 @@
Metadata-Version: 1.2
Name: h5py
-Version: 3.3.0
+Version: 3.4.0
Summary: Read and write HDF5 files from Python
Home-page: http://www.h5py.org
Author: Andrew Collette
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/README.rst new/h5py-3.4.0/README.rst
--- old/h5py-3.3.0/README.rst 2021-05-09 13:55:36.000000000 +0200
+++ new/h5py-3.4.0/README.rst 2021-07-08 14:39:25.000000000 +0200
@@ -34,7 +34,7 @@
--------------
Open a bug at https://github.com/h5py/h5py/issues. For general questions, ask
-on the list (https://groups.google.com/d/forum/h5py).
+on the HDF forum (https://forum.hdfgroup.org/c/hdf-tools/h5py).
.. _`Continuum Anaconda`: http://continuum.io/downloads
.. _`Enthought Canopy`: https://www.enthought.com/products/canopy/
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/docs/conf.py new/h5py-3.4.0/docs/conf.py
--- old/h5py-3.3.0/docs/conf.py 2021-06-22 14:06:03.000000000 +0200
+++ new/h5py-3.4.0/docs/conf.py 2021-08-23 10:28:23.000000000 +0200
@@ -61,7 +61,7 @@
# built documents.
#
# The full version, including alpha/beta/rc tags.
-release = '3.3.0'
+release = '3.4.0'
# The short X.Y version.
version = '.'.join(release.split('.')[:2])
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/docs/high/group.rst
new/h5py-3.4.0/docs/high/group.rst
--- old/h5py-3.3.0/docs/high/group.rst 2021-06-22 12:28:44.000000000 +0200
+++ new/h5py-3.4.0/docs/high/group.rst 2021-08-12 13:30:42.000000000 +0200
@@ -106,7 +106,7 @@
Note that this is `not` a copy of the dataset! Like hard links in a UNIX file
system, objects in an HDF5 file can be stored in multiple groups::
- >>> f["other name"] == f["name"]
+ >>> grp["other name"] == grp["name"]
True
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/docs/whatsnew/3.4.rst
new/h5py-3.4.0/docs/whatsnew/3.4.rst
--- old/h5py-3.3.0/docs/whatsnew/3.4.rst 1970-01-01 01:00:00.000000000
+0100
+++ new/h5py-3.4.0/docs/whatsnew/3.4.rst 2021-08-23 10:28:23.000000000
+0200
@@ -0,0 +1,20 @@
+What's new in h5py 3.4
+======================
+
+New features
+------------
+
+* The pre-built wheels now bundle HDF5 1.12.1 (:pr:`1945`).
+* ``len()`` now works on ``dset.astype()``, ``.asstr()`` and ``.fields()``
+ wrappers (:pr:`1913`).
+
+Bug fixes
+---------
+
+* Fix bug introduced in version 3.3 that did not allow the creation of files
+ using the flag "a" for certain drivers (e.g. mpiio, core and stdio)
+ (:pr:`1922`).
+* Dataset indexing will now use the optimized fast path, which was accidentally
+ disabled in a previous version (:pr:`1944`).
+* Fix an error building with Cython 3.0 alpha 8 (``cpdef`` inside functions)
+ (:pr:`1923`).
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/docs/whatsnew/index.rst
new/h5py-3.4.0/docs/whatsnew/index.rst
--- old/h5py-3.3.0/docs/whatsnew/index.rst 2021-06-22 14:06:03.000000000
+0200
+++ new/h5py-3.4.0/docs/whatsnew/index.rst 2021-08-23 10:28:23.000000000
+0200
@@ -8,6 +8,7 @@
.. toctree::
+ 3.4
3.3
3.2
3.1
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/h5py/_hl/dataset.py
new/h5py-3.4.0/h5py/_hl/dataset.py
--- old/h5py-3.3.0/h5py/_hl/dataset.py 2021-06-22 12:28:44.000000000 +0200
+++ new/h5py-3.4.0/h5py/_hl/dataset.py 2021-08-18 10:27:08.000000000 +0200
@@ -161,18 +161,25 @@
# pylint: disable=protected-access
self._dset._local.astype = None
+ def __len__(self):
+ """ Get the length of the underlying dataset
+
+ >>> length = len(dataset.astype('f8'))
+ """
+ return len(self._dset)
+
class AsStrWrapper:
"""Wrapper to decode strings on reading the dataset"""
def __init__(self, dset, encoding, errors='strict'):
- self.dset = dset
+ self._dset = dset
if encoding is None:
encoding = h5t.check_string_dtype(dset.dtype).encoding
self.encoding = encoding
self.errors = errors
def __getitem__(self, args):
- bytes_arr = self.dset[args]
+ bytes_arr = self._dset[args]
# numpy.char.decode() seems like the obvious thing to use. But it only
# accepts numpy string arrays, not object arrays of bytes (which we
# return from HDF5 variable-length strings). And the numpy
@@ -186,24 +193,38 @@
b.decode(self.encoding, self.errors) for b in bytes_arr.flat
], dtype=object).reshape(bytes_arr.shape)
+ def __len__(self):
+ """ Get the length of the underlying dataset
+
+ >>> length = len(dataset.asstr())
+ """
+ return len(self._dset)
+
class FieldsWrapper:
"""Wrapper to extract named fields from a dataset with a struct dtype"""
extract_field = None
def __init__(self, dset, prior_dtype, names):
- self.dset = dset
+ self._dset = dset
if isinstance(names, str):
self.extract_field = names
names = [names]
self.read_dtype = readtime_dtype(prior_dtype, names)
def __getitem__(self, args):
- data = self.dset.__getitem__(args, new_dtype=self.read_dtype)
+ data = self._dset.__getitem__(args, new_dtype=self.read_dtype)
if self.extract_field is not None:
data = data[self.extract_field]
return data
+ def __len__(self):
+ """ Get the length of the underlying dataset
+
+ >>> length = len(dataset.fields(['x', 'y']))
+ """
+ return len(self._dset)
+
def readtime_dtype(basetype, names):
"""Make a NumPy compound dtype with a subset of available fields"""
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/h5py/_hl/files.py
new/h5py-3.4.0/h5py/_hl/files.py
--- old/h5py-3.3.0/h5py/_hl/files.py 2021-06-22 12:28:44.000000000 +0200
+++ new/h5py-3.4.0/h5py/_hl/files.py 2021-07-21 12:48:19.000000000 +0200
@@ -209,7 +209,18 @@
# existing one (ACC_EXCL)
try:
fid = h5f.open(name, h5f.ACC_RDWR, fapl=fapl)
- except FileNotFoundError:
+ # Not all drivers raise FileNotFoundError (commented those that do not)
+ except FileNotFoundError if fapl.get_driver() in (
+ h5fd.SEC2,
+ # h5fd.STDIO,
+ # h5fd.CORE,
+ h5fd.FAMILY,
+ h5fd.WINDOWS,
+ # h5fd.MPIO,
+ # h5fd.MPIPOSIX,
+ h5fd.fileobj_driver,
+ h5fd.ROS3D if ros3 else -1,
+ ) else OSError:
fid = h5f.create(name, h5f.ACC_EXCL, fapl=fapl, fcpl=fcpl)
else:
raise ValueError("Invalid mode; must be one of r, r+, w, w-, x, a")
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/h5py/_selector.pyx
new/h5py-3.4.0/h5py/_selector.pyx
--- old/h5py-3.3.0/h5py/_selector.pyx 2021-05-09 13:55:36.000000000 +0200
+++ new/h5py-3.4.0/h5py/_selector.pyx 2021-08-20 14:27:02.000000000 +0200
@@ -309,7 +309,7 @@
h5_stored_datatype = typewrap(H5Dget_type(self.dataset))
np_dtype = h5_stored_datatype.py_dtype()
self.np_typenum = np_dtype.num
- self.native_byteorder = PyArray_IsNativeByteOrder(np_dtype.byteorder)
+ self.native_byteorder =
PyArray_IsNativeByteOrder(ord(np_dtype.byteorder))
self.h5_memory_datatype = py_create(np_dtype)
cdef ndarray make_array(self, hsize_t* mshape):
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/h5py/h5pl.pyx new/h5py-3.4.0/h5py/h5pl.pyx
--- old/h5py-3.3.0/h5py/h5pl.pyx 2021-05-09 13:55:36.000000000 +0200
+++ new/h5py-3.4.0/h5py/h5pl.pyx 2021-07-08 10:44:27.000000000 +0200
@@ -62,8 +62,8 @@
Get the directory path at the given index (starting from 0) in the
plugin search path. Returns a Python bytes object.
"""
- cpdef size_t n
- cpdef char* buf = NULL
+ cdef size_t n
+ cdef char* buf = NULL
n = H5PLget(index, NULL, 0)
buf = <char*>emalloc(sizeof(char)*(n + 1))
@@ -78,6 +78,6 @@
Get the number of directories currently in the plugin search path.
"""
- cpdef unsigned int n = 0
+ cdef unsigned int n = 0
H5PLsize(&n)
return n
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/h5py/tests/common.py
new/h5py-3.4.0/h5py/tests/common.py
--- old/h5py-3.3.0/h5py/tests/common.py 2021-05-09 13:55:36.000000000 +0200
+++ new/h5py-3.4.0/h5py/tests/common.py 2021-08-20 14:27:02.000000000 +0200
@@ -130,7 +130,7 @@
assert np.all(dset[...] == arr[...]), \
"Arrays are not equal (dtype %s) %s" % (arr.dtype.str, message)
- def assertNumpyBehavior(self, dset, arr, s):
+ def assertNumpyBehavior(self, dset, arr, s, skip_fast_reader=False):
""" Apply slicing arguments "s" to both dset and arr.
Succeeds if the results of the slicing are identical, or the
@@ -144,12 +144,24 @@
except Exception as e:
exc = type(e)
+ s_fast = s if isinstance(s, tuple) else (s,)
+
if exc is None:
self.assertArrayEqual(dset[s], arr_result)
+
+ if not skip_fast_reader:
+ self.assertArrayEqual(
+ dset._fast_reader.read(s_fast),
+ arr_result,
+ )
else:
with self.assertRaises(exc):
dset[s]
+ if not skip_fast_reader:
+ with self.assertRaises(exc):
+ dset._fast_reader.read(s_fast)
+
NUMPY_RELEASE_VERSION = tuple([int(i) for i in np.__version__.split(".")[0:2]])
@contextmanager
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/h5py/tests/test_dataset.py
new/h5py-3.4.0/h5py/tests/test_dataset.py
--- old/h5py-3.3.0/h5py/tests/test_dataset.py 2021-06-22 12:28:44.000000000
+0200
+++ new/h5py-3.4.0/h5py/tests/test_dataset.py 2021-08-18 10:27:08.000000000
+0200
@@ -1151,6 +1151,10 @@
# latin-1 will decode it but give the wrong text
self.assertNotEqual(ds.asstr('latin-1')[0], data)
+ # len of ds
+ self.assertEqual(10, len(ds.asstr()))
+
+
# Array output
np.testing.assert_array_equal(
ds.asstr()[:1], np.array([data], dtype=object)
@@ -1274,6 +1278,9 @@
self.f['test'].fields('x')[:], testdata['x']
)
+ # Check len() on fields wrapper
+ assert len(self.f['test'].fields('x')) == 16
+
class TestSubarray(BaseDataset):
def test_write_list(self):
@@ -1464,6 +1471,13 @@
arr = dset.astype('f4')[:]
self.assertArrayEqual(arr, np.arange(100, dtype='f4'))
+
+ def test_astype_wrapper_len(self):
+ dset = self.f.create_dataset('x', (100,), dtype='i2')
+ dset[...] = np.arange(100)
+ self.assertEqual(100, len(dset.astype('f4')))
+
+
class TestScalarCompound(BaseDataset):
"""
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/h5py/tests/test_dataset_getitem.py
new/h5py-3.4.0/h5py/tests/test_dataset_getitem.py
--- old/h5py-3.3.0/h5py/tests/test_dataset_getitem.py 2021-05-09
13:55:36.000000000 +0200
+++ new/h5py-3.4.0/h5py/tests/test_dataset_getitem.py 2021-08-20
14:27:02.000000000 +0200
@@ -366,7 +366,13 @@
def test_mask(self):
""" mask -> ndarray of matching shape """
mask = np.ones((0,), dtype='bool')
- self.assertNumpyBehavior(self.dset, self.data, np.s_[mask])
+ self.assertNumpyBehavior(
+ self.dset,
+ self.data,
+ np.s_[mask],
+ # Fast reader doesn't work with boolean masks
+ skip_fast_reader=True,
+ )
def test_fieldnames(self):
""" field name -> ValueError (no fields) """
@@ -481,13 +487,31 @@
self.dset[[1,1,2]]
def test_mask_true(self):
- self.assertNumpyBehavior(self.dset, self.data, np.s_[self.data > -100])
+ self.assertNumpyBehavior(
+ self.dset,
+ self.data,
+ np.s_[self.data > -100],
+ # Fast reader doesn't work with boolean masks
+ skip_fast_reader=True,
+ )
def test_mask_false(self):
- self.assertNumpyBehavior(self.dset, self.data, np.s_[self.data > 100])
+ self.assertNumpyBehavior(
+ self.dset,
+ self.data,
+ np.s_[self.data > 100],
+ # Fast reader doesn't work with boolean masks
+ skip_fast_reader=True,
+ )
def test_mask_partial(self):
- self.assertNumpyBehavior(self.dset, self.data, np.s_[self.data > 5])
+ self.assertNumpyBehavior(
+ self.dset,
+ self.data,
+ np.s_[self.data > 5],
+ # Fast reader doesn't work with boolean masks
+ skip_fast_reader=True,
+ )
def test_mask_wrongsize(self):
""" we require the boolean mask shape to match exactly """
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/h5py/tests/test_dtype.py
new/h5py-3.4.0/h5py/tests/test_dtype.py
--- old/h5py-3.3.0/h5py/tests/test_dtype.py 2021-06-22 12:28:44.000000000
+0200
+++ new/h5py-3.4.0/h5py/tests/test_dtype.py 2021-08-12 13:30:42.000000000
+0200
@@ -287,7 +287,7 @@
self.assertArrayEqual(fd['data'], data)
def test_float_round_tripping(self):
- dtypes = set(f for f in np.typeDict.values()
+ dtypes = set(f for f in np.sctypeDict.values()
if (np.issubdtype(f, np.floating) or
np.issubdtype(f, np.complexfloating)))
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/h5py/tests/test_file.py
new/h5py-3.4.0/h5py/tests/test_file.py
--- old/h5py-3.3.0/h5py/tests/test_file.py 2021-06-22 12:28:44.000000000
+0200
+++ new/h5py-3.4.0/h5py/tests/test_file.py 2021-07-21 12:48:19.000000000
+0200
@@ -240,6 +240,12 @@
self.assertEqual(fid.driver, 'stdio')
fid.close()
+ # Testing creation with append flag
+ fid = File(self.mktemp(), 'a', driver='stdio')
+ self.assertTrue(fid)
+ self.assertEqual(fid.driver, 'stdio')
+ fid.close()
+
@ut.skipUnless(os.name == 'posix', "Sec2 driver is supported on posix")
def test_sec2(self):
""" Sec2 driver is supported on posix """
@@ -248,6 +254,12 @@
self.assertEqual(fid.driver, 'sec2')
fid.close()
+ # Testing creation with append flag
+ fid = File(self.mktemp(), 'a', driver='sec2')
+ self.assertTrue(fid)
+ self.assertEqual(fid.driver, 'sec2')
+ fid.close()
+
def test_core(self):
""" Core driver is supported (no backing store) """
fname = self.mktemp()
@@ -257,6 +269,12 @@
fid.close()
self.assertFalse(os.path.exists(fname))
+ # Testing creation with append flag
+ fid = File(self.mktemp(), 'a', driver='core')
+ self.assertTrue(fid)
+ self.assertEqual(fid.driver, 'core')
+ fid.close()
+
def test_backing(self):
""" Core driver saves to file when backing store used """
fname = self.mktemp()
@@ -762,6 +780,14 @@
assert f
assert f.driver == 'mpio'
+ def test_mpio_append(self, mpi_file_name):
+ """ Testing creation of file with append """
+ from mpi4py import MPI
+
+ with File(mpi_file_name, 'a', driver='mpio', comm=MPI.COMM_WORLD) as f:
+ assert f
+ assert f.driver == 'mpio'
+
@pytest.mark.skipif(h5py.version.hdf5_version_tuple < (1, 8, 9),
reason="mpio atomic file operations were added in HDF5 1.8.9+")
def test_mpi_atomic(self, mpi_file_name):
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/h5py/version.py
new/h5py-3.4.0/h5py/version.py
--- old/h5py-3.3.0/h5py/version.py 2021-06-22 14:06:03.000000000 +0200
+++ new/h5py-3.4.0/h5py/version.py 2021-08-23 10:28:23.000000000 +0200
@@ -23,7 +23,7 @@
hdf5_built_version_tuple = _h5.HDF5_VERSION_COMPILED_AGAINST
-version_tuple = _H5PY_VERSION_CLS(3, 3, 0, None, None, None)
+version_tuple = _H5PY_VERSION_CLS(3, 4, 0, None, None, None)
version = "{0.major:d}.{0.minor:d}.{0.bugfix:d}".format(version_tuple)
if version_tuple.pre is not None:
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/h5py.egg-info/PKG-INFO
new/h5py-3.4.0/h5py.egg-info/PKG-INFO
--- old/h5py-3.3.0/h5py.egg-info/PKG-INFO 2021-06-22 14:25:32.000000000
+0200
+++ new/h5py-3.4.0/h5py.egg-info/PKG-INFO 2021-08-23 10:31:52.000000000
+0200
@@ -1,6 +1,6 @@
Metadata-Version: 1.2
Name: h5py
-Version: 3.3.0
+Version: 3.4.0
Summary: Read and write HDF5 files from Python
Home-page: http://www.h5py.org
Author: Andrew Collette
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/h5py.egg-info/SOURCES.txt
new/h5py-3.4.0/h5py.egg-info/SOURCES.txt
--- old/h5py-3.3.0/h5py.egg-info/SOURCES.txt 2021-06-22 14:25:32.000000000
+0200
+++ new/h5py-3.4.0/h5py.egg-info/SOURCES.txt 2021-08-23 10:31:52.000000000
+0200
@@ -1,4 +1,3 @@
-AUTHORS
LICENSE
MANIFEST.in
README.rst
@@ -53,6 +52,7 @@
docs/whatsnew/3.1.rst
docs/whatsnew/3.2.rst
docs/whatsnew/3.3.rst
+docs/whatsnew/3.4.rst
docs/whatsnew/index.rst
docs_api/Makefile
docs_api/automod.py
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/setup.py new/h5py-3.4.0/setup.py
--- old/h5py-3.3.0/setup.py 2021-06-22 14:06:03.000000000 +0200
+++ new/h5py-3.4.0/setup.py 2021-08-23 10:28:23.000000000 +0200
@@ -22,7 +22,7 @@
import setup_build, setup_configure
-VERSION = '3.3.0'
+VERSION = '3.4.0'
# Minimum supported versions of Numpy & Cython depend on the Python version
NUMPY_MIN_VERSIONS = [
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5py-3.3.0/tox.ini new/h5py-3.4.0/tox.ini
--- old/h5py-3.3.0/tox.ini 2021-06-22 12:28:44.000000000 +0200
+++ new/h5py-3.4.0/tox.ini 2021-08-12 13:30:42.000000000 +0200
@@ -100,4 +100,4 @@
lazyasd
ruamel.yaml
commands=
- rever check --activities authors,version_bump,changelog
+ rever check --activities version_bump,changelog
