Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package bowtie2 for openSUSE:Factory checked
in at 2022-01-22 08:18:10
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/bowtie2 (Old)
and /work/SRC/openSUSE:Factory/.bowtie2.new.1938 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "bowtie2"
Sat Jan 22 08:18:10 2022 rev:8 rq:947869 version:2.4.5
Changes:
--------
--- /work/SRC/openSUSE:Factory/bowtie2/bowtie2.changes 2021-07-03
20:51:29.688470655 +0200
+++ /work/SRC/openSUSE:Factory/.bowtie2.new.1938/bowtie2.changes
2022-01-22 08:19:06.182532233 +0100
@@ -1,0 +2,17 @@
+Thu Jan 20 19:38:08 UTC 2022 - Atri Bhattacharya <badshah...@gmail.com>
+
+- Update to version 2.4.5:
+ * Fixed issues with bowtie2 BAM parser that would cause bowtie2
+ to crash when processing input that was encoded with tools
+ other than samtools e.g. Picard.
+ * Fixed an issue causing bowtie2 to drop certain optional fields
+ when when aligning BAM reads with the --preserve-tags option.
+ * Fixed an issue causing bowtie2 to produce mangled SAM output
+ when specifying --sam-append-comment together with the
+ --passthrough option.
+ * Appended GO:query to SAM @HD entry to indicate that reads are
+ grouped by query name, bump SAM version to 1.5 to indicate
+ support for this change.
+- Update simde to version 0.7.2.
+
+-------------------------------------------------------------------
Old:
----
bowtie2-2.4.4.tar.gz
simde-0.7.0.tar.gz
New:
----
bowtie2-2.4.5.tar.gz
simde-0.7.2.tar.gz
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ bowtie2.spec ++++++
--- /var/tmp/diff_new_pack.7oYFsV/_old 2022-01-22 08:19:06.662528999 +0100
+++ /var/tmp/diff_new_pack.7oYFsV/_new 2022-01-22 08:19:06.666528971 +0100
@@ -1,7 +1,7 @@
#
# spec file for package bowtie2
#
-# Copyright (c) 2021 SUSE LLC
+# Copyright (c) 2022 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -16,12 +16,12 @@
#
-%global simde_version 0.7.0
+%global simde_version 0.7.2
%ifarch aarch64
%define _lto_cflags %{nil}
%endif
Name: bowtie2
-Version: 2.4.4
+Version: 2.4.5
Release: 0
Summary: Fast and memory-efficient short read aligner
License: GPL-3.0-only
++++++ bowtie2-2.4.4.tar.gz -> bowtie2-2.4.5.tar.gz ++++++
/work/SRC/openSUSE:Factory/bowtie2/bowtie2-2.4.4.tar.gz
/work/SRC/openSUSE:Factory/.bowtie2.new.1938/bowtie2-2.4.5.tar.gz differ: char
25, line 1
++++++ simde-0.7.0.tar.gz -> simde-0.7.2.tar.gz ++++++
++++ 20347 lines of diff (skipped)
