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here is the log from the commit of package python-h5netcdf for openSUSE:Factory
checked in at 2022-08-09 15:43:47
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/python-h5netcdf (Old)
and /work/SRC/openSUSE:Factory/.python-h5netcdf.new.1521 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python-h5netcdf"
Tue Aug 9 15:43:47 2022 rev:6 rq:994143 version:1.0.2
Changes:
--------
--- /work/SRC/openSUSE:Factory/python-h5netcdf/python-h5netcdf.changes
2022-08-01 21:33:18.714157889 +0200
+++
/work/SRC/openSUSE:Factory/.python-h5netcdf.new.1521/python-h5netcdf.changes
2022-08-09 15:43:50.436272948 +0200
@@ -1,0 +2,7 @@
+Tue Aug 2 12:08:07 UTC 2022 - Matej Cepl <mc...@suse.com>
+
+- Update to 1.0.2:
+ - Adapt boolean indexing as h5py 3.7.0
+ - Fix several tests to work with new h5py 3.7.0
+
+-------------------------------------------------------------------
Old:
----
h5netcdf-1.0.1.tar.gz
New:
----
h5netcdf-1.0.2.tar.gz
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-h5netcdf.spec ++++++
--- /var/tmp/diff_new_pack.mYJSeB/_old 2022-08-09 15:43:50.872274184 +0200
+++ /var/tmp/diff_new_pack.mYJSeB/_new 2022-08-09 15:43:50.876274196 +0200
@@ -20,7 +20,7 @@
%define skip_python2 1
%define skip_python36 1
Name: python-h5netcdf
-Version: 1.0.1
+Version: 1.0.2
Release: 0
Summary: A Python library to use netCDF4 files via h5py
License: BSD-3-Clause
@@ -57,8 +57,7 @@
%python_expand %fdupes %{buildroot}%{$python_sitelib}
%check
-# gh#h5netcdf/h5netcdf#179
-%pytest -rs -k 'not (test_more_than_7_attr_creation_track_order or
test_bool_slicing_length_one_dim)'
+%pytest -rs
%files %{python_files}
%doc README.rst
++++++ h5netcdf-1.0.1.tar.gz -> h5netcdf-1.0.2.tar.gz ++++++
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5netcdf-1.0.1/CHANGELOG.rst
new/h5netcdf-1.0.2/CHANGELOG.rst
--- old/h5netcdf-1.0.1/CHANGELOG.rst 2022-06-27 09:26:03.000000000 +0200
+++ new/h5netcdf-1.0.2/CHANGELOG.rst 2022-08-02 11:33:39.000000000 +0200
@@ -1,5 +1,11 @@
Change Log
----------
+Version 1.0.2 (August 2nd, 2022):
+
+- Adapt boolean indexing as h5py 3.7.0 started supporting it.
+ By `Kai M??hlbauer <https://github.com/kmuehlbauer>`_.
+- Fix several tests to work with new h5py 3.7.0.
+ By `Mark Harfouche <https://github.com/hmaarrfk>`_ and `Kai M??hlbauer
<https://github.com/kmuehlbauer>`_.
Version 1.0.1 (June 27th, 2022):
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5netcdf-1.0.1/PKG-INFO new/h5netcdf-1.0.2/PKG-INFO
--- old/h5netcdf-1.0.1/PKG-INFO 2022-06-27 09:26:19.558160000 +0200
+++ new/h5netcdf-1.0.2/PKG-INFO 2022-08-02 11:34:00.711885000 +0200
@@ -1,6 +1,6 @@
Metadata-Version: 2.1
Name: h5netcdf
-Version: 1.0.1
+Version: 1.0.2
Summary: netCDF4 via h5py
Home-page: https://h5netcdf.org
Author: h5netcdf developers
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5netcdf-1.0.1/doc/devguide.rst
new/h5netcdf-1.0.2/doc/devguide.rst
--- old/h5netcdf-1.0.1/doc/devguide.rst 2022-06-27 09:26:03.000000000 +0200
+++ new/h5netcdf-1.0.2/doc/devguide.rst 2022-08-02 11:33:39.000000000 +0200
@@ -11,6 +11,7 @@
------------
- `Aleksandar Jelenak <https://github.com/ajelenak>`_
+- `Bas Couwenberg <https://github.com/sebastic>`_.
- `Brett Naul <https://github.com/bnaul>`_
- `Dion H??fner <https://github.com/dionhaefner>`_
- `Drew Parsons <https://github.com/drew-parsons>`_
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5netcdf-1.0.1/doc/feature.rst
new/h5netcdf-1.0.2/doc/feature.rst
--- old/h5netcdf-1.0.1/doc/feature.rst 2022-06-27 09:26:03.000000000 +0200
+++ new/h5netcdf-1.0.2/doc/feature.rst 2022-08-02 11:33:39.000000000 +0200
@@ -14,7 +14,7 @@
+---------------------+-------------------------+----------------+------------------+
| feature | legacyapi | new api | type
|
+=====================+=========================+================+==================+
-| 1D boolean indexer | |check| | |cross| |
Variable/Dataset |
+| 1D boolean indexer | |check| | |check| |
Variable/Dataset |
+---------------------+-------------------------+----------------+------------------+
| resize on write | |check| | |cross| | Dimension
|
| | | |
Variable/Dataset |
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5netcdf-1.0.1/doc/index.rst
new/h5netcdf-1.0.2/doc/index.rst
--- old/h5netcdf-1.0.1/doc/index.rst 2022-06-27 09:26:03.000000000 +0200
+++ new/h5netcdf-1.0.2/doc/index.rst 2022-08-02 11:33:39.000000000 +0200
@@ -50,7 +50,7 @@
`xarray issue tracker`_ only one day later.
The library evolved constantly over the years (fixing bugs and adding
enhancements)
-and gained contributions from 14 other :ref:`contributors` so far. The library
is widely used,
+and gained contributions from 15 other :ref:`contributors` so far. The library
is widely used,
especially as backend within `xarray`_.
Early 2020 Kai M??hlbauer started to add contributions and after some time he
volunteered
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5netcdf-1.0.1/h5netcdf/_version.py
new/h5netcdf-1.0.2/h5netcdf/_version.py
--- old/h5netcdf-1.0.1/h5netcdf/_version.py 2022-06-27 09:26:18.000000000
+0200
+++ new/h5netcdf-1.0.2/h5netcdf/_version.py 2022-08-02 11:34:00.000000000
+0200
@@ -1,5 +1,5 @@
# coding: utf-8
# file generated by setuptools_scm
# don't change, don't track in version control
-__version__ = version = '1.0.1'
-__version_tuple__ = version_tuple = (1, 0, 1)
+__version__ = version = '1.0.2'
+__version_tuple__ = version_tuple = (1, 0, 2)
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5netcdf-1.0.1/h5netcdf/core.py
new/h5netcdf-1.0.2/h5netcdf/core.py
--- old/h5netcdf-1.0.1/h5netcdf/core.py 2022-06-27 09:26:03.000000000 +0200
+++ new/h5netcdf-1.0.2/h5netcdf/core.py 2022-08-02 11:33:39.000000000 +0200
@@ -280,7 +280,12 @@
if isinstance(self._parent._root, Dataset):
# this is only for legacyapi
key = _expanded_indexer(key, self.ndim)
- key = _transform_1d_boolean_indexers(key)
+ # fix boolean indexing for affected versions
+ # https://github.com/h5py/h5py/pull/2079
+ # https://github.com/h5netcdf/h5netcdf/pull/125/
+ h5py_version = version.parse(h5py.__version__)
+ if version.parse("3.0.0") <= h5py_version < version.parse("3.7.0"):
+ key = _transform_1d_boolean_indexers(key)
if getattr(self._root, "decode_vlen_strings", False):
string_info = self._root._h5py.check_string_dtype(self._h5ds.dtype)
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5netcdf-1.0.1/h5netcdf/tests/test_h5netcdf.py
new/h5netcdf-1.0.2/h5netcdf/tests/test_h5netcdf.py
--- old/h5netcdf-1.0.1/h5netcdf/tests/test_h5netcdf.py 2022-06-27
09:26:03.000000000 +0200
+++ new/h5netcdf-1.0.2/h5netcdf/tests/test_h5netcdf.py 2022-08-02
11:33:39.000000000 +0200
@@ -1600,7 +1600,8 @@
# https://github.com/h5netcdf/h5netcdf/issues/136#issuecomment-1017457067
@pytest.mark.parametrize("track_order", [False, True])
def test_more_than_7_attr_creation_track_order(tmp_local_netcdf, track_order):
- if track_order:
+ h5py_version = version.parse(h5py.__version__)
+ if track_order and h5py_version < version.parse("3.7.0"):
expected_errors = pytest.raises(KeyError)
else:
# We don't expect any errors. This is effectively a void context
manager
@@ -1695,9 +1696,12 @@
data = ds["hello"][bool_slice, :]
np.testing.assert_equal(data, np.zeros((1, 2)))
- # should raise for h5py >= 3.0.0
+ # should raise for h5py >= 3.0.0 and h5py < 3.7.0
+ # https://github.com/h5py/h5py/pull/2079
+ # https://github.com/h5netcdf/h5netcdf/pull/125/
with h5netcdf.File(tmp_local_netcdf, "r") as ds:
- if version.parse(h5py.__version__) >= version.parse("3.0.0"):
+ h5py_version = version.parse(h5py.__version__)
+ if version.parse("3.0.0") <= h5py_version < version.parse("3.7.0"):
error = "Indexing arrays must have integer dtypes"
with pytest.raises(TypeError) as e:
ds["hello"][bool_slice, :]
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/h5netcdf-1.0.1/h5netcdf.egg-info/PKG-INFO
new/h5netcdf-1.0.2/h5netcdf.egg-info/PKG-INFO
--- old/h5netcdf-1.0.1/h5netcdf.egg-info/PKG-INFO 2022-06-27
09:26:19.000000000 +0200
+++ new/h5netcdf-1.0.2/h5netcdf.egg-info/PKG-INFO 2022-08-02
11:34:00.000000000 +0200
@@ -1,6 +1,6 @@
Metadata-Version: 2.1
Name: h5netcdf
-Version: 1.0.1
+Version: 1.0.2
Summary: netCDF4 via h5py
Home-page: https://h5netcdf.org
Author: h5netcdf developers
