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Hello community,
here is the log from the commit of package netcdf for openSUSE:Factory checked
in at 2023-01-04 17:53:00
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/netcdf (Old)
and /work/SRC/openSUSE:Factory/.netcdf.new.1563 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "netcdf"
Wed Jan 4 17:53:00 2023 rev:67 rq:1049747 version:4.9.0
Changes:
--------
--- /work/SRC/openSUSE:Factory/netcdf/netcdf.changes 2022-12-12
17:42:26.878045488 +0100
+++ /work/SRC/openSUSE:Factory/.netcdf.new.1563/netcdf.changes 2023-01-04
17:53:14.146405485 +0100
@@ -1,0 +2,92 @@
+Fri Dec 30 10:06:16 UTC 2022 - Stefan Brüns <stefan.bru...@rwth-aachen.de>
+
+- Update to version 4.9.0:
+ * [Enhancement] Improve filter installation process to avoid use
+ of an extra shell script. See gh#Unidata/netcdf-c#2348.
+ * [Bug Fix] Get "make distcheck" to work See
+ gh#Unidata/netcdf-c#/2343.
+ * [Enhancement] Allow the read/write of JSON-valued Zarr
+ attributes to allow for domain specific info such as used by
+ GDAL/Zarr. See gh#Unidata/netcdf-c#2278.
+ * [Enhancement] Turn on the XArray convention for NCZarr files by
+ default. WARNING, this means that the mode should explicitly
+ specify nczarr" or "zarr" even if "xarray" or "noxarray" is
+ specified. See gh#Unidata/netcdf-c#2257.
+ * [Enhancement] Update the documentation to match the current
+ filter capabilities See gh#Unidata/netcdf-c#2249.
+ * [Enhancement] Support installation of pre-built standard
+ filters into user-specified location. See
+ gh#Unidata/netcdf-c#2318.
+ * [Enhancement] Improve filter support. More specifically (1)
+ add nc_inq_filter_avail to check if a filter is available, (2)
+ add the notion of standard filters, (3) cleanup szip support
+ to fix interaction with NCZarr. See gh#Unidata/netcdf-c#2245.
+ * [Enhancement] Switch to tinyxml2 as the default xml parser
+ implementation. See gh#Unidata/netcdf-c#2170.
+ * [Bug Fix] Require that the type of the variable in
+ nc_def_var_filter is not variable length.
+ See gh#Unidata/netcdf-c#/2231.
+ * [File Change] Apply HDF5 v1.8 format compatibility when
+ writing to previous files, as well as when creating new files.
+ The superblock version remains at 2 for newly created files.
+ Full backward read/write compatibility for netCDF-4 is
+ maintained in all cases. See gh#Unidata/netcdf-c#2176.
+ * [Enhancement] Add ability to set dataset alignment for
+ netcdf-4/HDF5 files. See gh#Unidata/netcdf-c#2206.
+ * [Bug Fix] Improve UTF8 support on windows so that it can use
+ utf8 natively. See gh#Unidata/netcdf-c#2222.
+ * [Enhancement] Add complete bitgroom support to NCZarr.
+ See gh#Unidata/netcdf-c#2197.
+ * [Bug Fix] Clean up the handling of deeply nested VLEN
+ types. Marks nc_free_vlen() and nc_free_string as deprecated
+ in favor of ncaux_reclaim_data(). See gh#Unidata/netcdf-c#2179.
+ * [Bug Fix] Make sure that netcdf.h accurately defines the flags
+ in the open/create mode flags. See gh#Unidata/netcdf-c#2183.
+ * [Enhancement] Improve support for msys2+mingw platform. See
+ gh#Unidata/netcdf-c#2171.
+ * [Bug Fix] Clean up the various inter-test dependencies in
+ ncdump for CMake. See gh#Unidata/netcdf-c#2168.
+ * [Bug Fix] Fix use of non-aws appliances. See
+ gh#Unidata/netcdf-c#2152.
+ * [Enhancement] Added options to suppress the new behavior from
+ gh#Unidata/netcdf-c#2135.
+ * [Enhancement] Support optional use of libxml2, otherwise
+ default to ezxml. See gh#Unidata/netcdf-c#2135
+ * [Bug Fix] Fix several os related errors. See
+ gh#Unidata/netcdf-c#2138.
+ * [Enhancement] Support byte-range reading of netcdf-3 files
+ stored in private buckets in S3. See gh#Unidata/netcdf-c#2134
+ * [Enhancement] Support Amazon S3 access for NCZarr. Also support
+ use of the existing Amazon SDK credentials system. See
+ gh#Unidata/netcdf-c#2114
+ * [Bug Fix] Fix string allocation error in H5FDhttp.c. See
+ gh#Unidata/netcdf-c#2127.
+ * [Bug Fix] Apply patches for ezxml and for selected oss-fuzz
+ detected errors. See gh#Unidata/netcdf-c#2125.
+ * [Bug Fix] Ensure that internal Fortran APIs are always
+ defined. See gh#Unidata/netcdf-c#2098.
+ * [Enhancement] Support filters for NCZarr. See
+ gh#Unidata/netcdf-c#2101
+ * [Bug Fix] Make PR 2075 long file name be idempotent. See
+ gh#Unidata/netcdf-c#2094.
+- Remove unused doxygen build dependency.
+- Remove some obsolete Provides/Obsoletes from library package.
+- Drop upstream patches:
+ * swap-4-8-b-Satisfy-strict-aliasing-rules.patch
+ *
Fix-type-punning-in-val_NC_check_voff-by-using-memcpy-instead-of-assignment.patch
+ *
Fix-type-punning-in-xxdrntohdouble-by-using-memcpy-instead-of-assignment.patch
+ * NCD4_dumpbytes-use-correct-swapline-for-object-size.patch
+ * d4util.h-make-swapinlineXX-more-robust-against-type-punning.patch
+ * bin_reclaim_compound-Fixed-uninitialized-variable.patch
+- Drop ezxml patches (replaced by tinyxml2/libxml2):
+ * Fix-for-CVE-2019-20200-ezxml-bug-19.patch
+ *
Fix-for-CVE-2019-20006-CVE-2019-20202-CVE-2021-31598-ezxml-bug-15-17-28.patch
+ * Fix-for-CVE-2019-20199-ezxml-bug-18.patch
+ * Fix-for-CVE-2019-20007-ezxml-bug-13.patch
+ * Fix-for-CVE-2021-26221-ezxml-bug-21.patch
+ * Fix-for-CVE-2021-26222-ezxml-bug-22.patch
+ * Fix-CVE-2021-30485-bug-25.patch
+ * Fix-CVE-2021-31229-bug-26-CVE-2019-20201-bug-16-CVE-2019-20198-bug-20.patch
+ * Fix-CVE-2021-31347-bug-27.patch
+
+-------------------------------------------------------------------
Old:
----
Fix-CVE-2021-30485-bug-25.patch
Fix-CVE-2021-31229-bug-26-CVE-2019-20201-bug-16-CVE-2019-20198-bug-20.patch
Fix-CVE-2021-31347-bug-27.patch
Fix-for-CVE-2019-20006-CVE-2019-20202-CVE-2021-31598-ezxml-bug-15-17-28.patch
Fix-for-CVE-2019-20007-ezxml-bug-13.patch
Fix-for-CVE-2019-20199-ezxml-bug-18.patch
Fix-for-CVE-2019-20200-ezxml-bug-19.patch
Fix-for-CVE-2021-26221-ezxml-bug-21.patch
Fix-for-CVE-2021-26222-ezxml-bug-22.patch
Fix-type-punning-in-val_NC_check_voff-by-using-memcpy-instead-of-assignment.patch
Fix-type-punning-in-xxdrntohdouble-by-using-memcpy-instead-of-assignment.patch
NCD4_dumpbytes-use-correct-swapline-for-object-size.patch
bin_reclaim_compound-Fixed-uninitialized-variable.patch
d4util.h-make-swapinlineXX-more-robust-against-type-punning.patch
netcdf-c-4.8.1.tar.gz
swap-4-8-b-Satisfy-strict-aliasing-rules.patch
New:
----
netcdf-c-4.9.0.tar.gz
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ netcdf.spec ++++++
--- /var/tmp/diff_new_pack.e0Th7T/_old 2023-01-04 17:53:14.882409823 +0100
+++ /var/tmp/diff_new_pack.e0Th7T/_new 2023-01-04 17:53:14.886409846 +0100
@@ -1,7 +1,7 @@
#
# spec file
#
-# Copyright (c) 2022 SUSE LLC
+# Copyright (c) 2023 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -20,8 +20,8 @@
%define _do_check 1
-%define ver 4.8.1
-%define _ver 4_8_1
+%define ver 4.9.0
+%define _ver 4_9_0
%define pname netcdf
%define sonum 19
@@ -38,6 +38,8 @@
%endif
%bcond_with valgrind_checks
+# Keep disabled until properly set up on HDF5 library side
+%bcond_with plugins
%if "%flavor" == ""
%define package_name %{pname}
@@ -479,44 +481,28 @@
URL: https://www.unidata.ucar.edu/software/netcdf/
Source:
https://downloads.unidata.ucar.edu/netcdf-c/%{version}/%{pname}-c-%{version}.tar.gz
Source1: nc-config.1.gz
-Patch1: swap-4-8-b-Satisfy-strict-aliasing-rules.patch
-Patch2:
Fix-type-punning-in-val_NC_check_voff-by-using-memcpy-instead-of-assignment.patch
-Patch3:
Fix-type-punning-in-xxdrntohdouble-by-using-memcpy-instead-of-assignment.patch
-Patch4: NCD4_dumpbytes-use-correct-swapline-for-object-size.patch
-Patch5:
d4util.h-make-swapinlineXX-more-robust-against-type-punning.patch
Patch6:
parseServers-Fix-uninitialized-variable-simplify-error-path.patch
-Patch7: bin_reclaim_compound-Fixed-uninitialized-variable.patch
Patch8: val_NC_check_voff-Fix-uninitialized-variable-warning.patch
Patch9: pr_att-Fix-uninitialized-variable.patch
Patch10: NCD4_dumpbytes-Add-missing-initialization-of-float-types.patch
Patch11: NCZ_def_var_chunking-make-sure-cs-is-set-before-used.patch
Patch12: Fix-spurious-uninitialized-variable-warning.patch
-Patch13: Fix-for-CVE-2019-20200-ezxml-bug-19.patch
-Patch14:
Fix-for-CVE-2019-20006-CVE-2019-20202-CVE-2021-31598-ezxml-bug-15-17-28.patch
-Patch15: Fix-for-CVE-2019-20199-ezxml-bug-18.patch
-Patch16: Fix-for-CVE-2019-20007-ezxml-bug-13.patch
-Patch17: Fix-for-CVE-2021-26221-ezxml-bug-21.patch
-Patch18: Fix-for-CVE-2021-26222-ezxml-bug-22.patch
-Patch19: Fix-CVE-2021-30485-bug-25.patch
-Patch20:
Fix-CVE-2021-31229-bug-26-CVE-2019-20201-bug-16-CVE-2019-20198-bug-20.patch
-Patch21: Fix-CVE-2021-31347-bug-27.patch
BuildRequires: autoconf
BuildRequires: automake
-BuildRequires: doxygen
BuildRequires: gawk
BuildRequires: libcurl-devel >= 7.18.0
BuildRequires: libtool
BuildRequires: pkg-config
BuildRequires: unzip
BuildRequires: zlib-devel >= 1.2.5
+BuildRequires: pkgconfig(libxml-2.0)
%if 0%{?valgrind_checks}
BuildRequires: valgrind
%endif
%if %{without hpc}
BuildRequires: gcc-c++
BuildRequires: gcc-fortran
-# Note hdf5 1.10 has incompatible on disk files
BuildRequires: hdf5%{p_suffix}-devel
BuildRequires: libhdf5_hl%{p_suffix}
%if %{with mpi}
@@ -548,12 +534,6 @@
%package -n %{libname -s %{sonum}}
Summary: Shared libraries for the NetCDF scientific data format
Group: Productivity/Scientific/Other
-%if %{without mpi} && %{without hpc}
-Provides: %{libname}-4 = %{version}
-Obsoletes: %{libname}-4 < %{version}
-%endif
-%{!?with_hpc:Provides: %{libname} = %{version}}
-Obsoletes: %{libname} < %{version}
%if %{without hpc}
# To avoid unresolvable errors due to multiple providers of the library
%{requires_eq libhdf5%{p_suffix}}
@@ -704,9 +684,17 @@
--with-pic \
--disable-doxygen \
--enable-static \
+%if %{with plugins}
+ --enable-plugins \
+ --with-plugin-dir=%{p_libdir}/hdf5/plugin/
+%else
+ --disable-plugins \
+%endif
# --enable-logging \
-make %{?_smp_mflags}
+%make_build
+# Build tests without executing
+%make_build check TESTS=""
%install
%{?with_hpc:%{hpc_setup}}
@@ -823,8 +811,9 @@
. /usr/%_lib/mpi/gcc/%{mpi_flavor}%{?mpi_ext}/bin/mpivars.sh
%endif
%endif
-%ifarch ppc64 s390x
- make check || { echo -e "WARNING: ignore check error for ppc64/s390x"; }
+%ifarch ppc64 s390x %ix86
+# tst_netcdf4_4 fails on ix86 - https://github.com/Unidata/netcdf-c/issues/2433
+ make check || { echo -e "WARNING: ignore check error for
ppc64/s390x/ix86"; }
%else
make check
%endif
++++++ netcdf-c-4.8.1.tar.gz -> netcdf-c-4.9.0.tar.gz ++++++
/work/SRC/openSUSE:Factory/netcdf/netcdf-c-4.8.1.tar.gz
/work/SRC/openSUSE:Factory/.netcdf.new.1563/netcdf-c-4.9.0.tar.gz differ: char
5, line 1
