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here is the log from the commit of package python-datashader for
openSUSE:Factory checked in at 2023-02-07 18:49:53
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/python-datashader (Old)
and /work/SRC/openSUSE:Factory/.python-datashader.new.4462 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python-datashader"
Tue Feb 7 18:49:53 2023 rev:21 rq:1063601 version:0.14.4
Changes:
--------
--- /work/SRC/openSUSE:Factory/python-datashader/python-datashader.changes
2022-11-24 12:23:06.825253513 +0100
+++
/work/SRC/openSUSE:Factory/.python-datashader.new.4462/python-datashader.changes
2023-02-07 18:49:56.191406244 +0100
@@ -1,0 +2,33 @@
+Tue Feb 7 09:00:17 UTC 2023 - Daniel Garcia <[email protected]>
+
+- Add Do-not-use-warnings-from-numpy.patch and numpy-1.24.patch to fix issues
+ with latest numpy gh#holoviz/datashader#1176 gh#holoviz/datashader#1158
+- Update to 0.14.4
+ * This release adds a new where reduction that provides improved inspection
+ capabilities and adds support for colormaps that are tuples of hex values.
+ There are also various bug fixes and compatibility improvements.
+ Thanks to @ianthomas23, @maximlt and @Hoxbro.
+ ## Enhancements:
+ * New where reduction to provide improved inspection functionality:
+ - Add new where reduction (#1155)
+ - Where reduction using dataframe row index (#1164)
+ - CUDA support for where reduction (#1167)
+ - User guide page for where reduction (#1172)
+ * Support colormaps that are tuples of hex values (#1173)
+ * Add governance docs (#1165)
+ * Improve documentation build system (#1170, #1171)
+ * Improvements to CI:
+ - Rename default branch from master to main (#1156)
+ - Use holoviz_task install action (#1163)
+ ## Bug fixes:
+ * Validate calculated log canvas range (#1154)
+ * Better validate canvas.line() coordinate lengths (#1160)
+ * Return early in eq_hist() if all data masked out (#1168)
+ ## Compatibility:
+ * Follow recommended numba best practice.
+ - Ensure cuda functions are correctly jitted (#1153)
+ - nopython=True everywhere (#1162)
+ * Update dependencies:
+ - Pip pyarrow in tests dependencies (#1174)
+
+-------------------------------------------------------------------
Old:
----
datashader-0.14.3.tar.gz
New:
----
Do-not-use-warnings-from-numpy.patch
datashader-0.14.4.tar.gz
numpy-1.24.patch
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-datashader.spec ++++++
--- /var/tmp/diff_new_pack.m2yLm2/_old 2023-02-07 18:49:56.979410479 +0100
+++ /var/tmp/diff_new_pack.m2yLm2/_new 2023-02-07 18:49:56.983410501 +0100
@@ -1,7 +1,7 @@
#
# spec file
#
-# Copyright (c) 2022 SUSE LLC
+# Copyright (c) 2023 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -28,13 +28,17 @@
%endif
Name: python-datashader%{psuffix}
-Version: 0.14.3
+Version: 0.14.4
Release: 0
Summary: Data visualization toolchain based on aggregating into a grid
License: BSD-3-Clause
URL: https://datashader.org
Source0:
https://files.pythonhosted.org/packages/source/d/datashader/datashader-%{version}.tar.gz
Source100: python-datashader-rpmlintrc
+# PATCH-FIX-OPENSUSE Do-not-use-warnings-from-numpy.patch
gh#holoviz/datashader#1176
+Patch0: Do-not-use-warnings-from-numpy.patch
+# PATCH-FIX-OPENSUSE numpy-1.24.patch gh#holoviz/datashader#1158
+Patch1: numpy-1.24.patch
BuildRequires: %{python_module devel >= 3.7}
BuildRequires: %{python_module numpy}
BuildRequires: %{python_module param >= 1.6.1}
@@ -112,7 +116,12 @@
%if %{with test}
%check
export PYTHONPATH=examples
-%pytest datashader/tests --doctest-modules --doctest-ignore-import-errors
+# Do not run broken tests because of
+# ValueError: setting an array element with a sequence. The requested array has
+# an inhomogeneous shape after 1 dimensions. The detected shape was (10,) +
+# inhomogeneous part.
+donottests="test_line_manual_range[df_kwargs5-cvs_kwargs5-dask_DataFrame] or
test_area_to_zero_fixedrange[df_kwargs3-cvs_kwargs3-dask_DataFrame] or
test_area_to_zero_autorange_gap[df_kwargs3-cvs_kwargs3-dask_DataFrame] or
test_area_to_line_autorange_gap[df_kwargs3-cvs_kwargs3-dask_DataFrame] or
test_series_repr or test_dataframe_repr"
+%pytest datashader/tests --doctest-modules --doctest-ignore-import-errors -k
"not ($donottests)"
%endif
%if ! %{with test}
++++++ Do-not-use-warnings-from-numpy.patch ++++++
>From 141210c8366599190c51987f7de126ff8f689961 Mon Sep 17 00:00:00 2001
From: Daniel Garcia Moreno <[email protected]>
Date: Tue, 7 Feb 2023 09:15:37 +0100
Subject: [PATCH] Do not use warnings from numpy
numpy has removed the warnings symbol from the __init__.py file so
np.warnings is not valid in newer versions of numpy. This patch justs
imports the warnings module and use it directly.
---
datashader/core.py | 6 +++---
datashader/transfer_functions/__init__.py | 6 ++++--
2 files changed, 7 insertions(+), 5 deletions(-)
diff --git a/datashader/core.py b/datashader/core.py
index 7c53658..5f17528 100644
--- a/datashader/core.py
+++ b/datashader/core.py
@@ -2,6 +2,7 @@ from __future__ import annotations
from numbers import Number
from math import log10
+import warnings
import numpy as np
import pandas as pd
@@ -424,7 +425,6 @@ The axis argument to Canvas.line must be 0 or 1
if (line_width > 0 and ((cudf and isinstance(source, cudf.DataFrame))
or
(dask_cudf and isinstance(source,
dask_cudf.DataFrame)))):
- import warnings
warnings.warn(
"Antialiased lines are not supported for CUDA-backed sources, "
"so reverting to line_width=0")
@@ -1255,8 +1255,8 @@ def bypixel(source, canvas, glyph, agg, *,
antialias=False):
canvas.validate()
# All-NaN objects (e.g. chunks of arrays with no data) are valid in
Datashader
- with np.warnings.catch_warnings():
- np.warnings.filterwarnings('ignore', r'All-NaN (slice|axis)
encountered')
+ with warnings.catch_warnings():
+ warnings.filterwarnings('ignore', r'All-NaN (slice|axis) encountered')
return bypixel.pipeline(source, schema, canvas, glyph, agg,
antialias=antialias)
diff --git a/datashader/transfer_functions/__init__.py
b/datashader/transfer_functions/__init__.py
index 1a9fffc..a60802d 100755
--- a/datashader/transfer_functions/__init__.py
+++ b/datashader/transfer_functions/__init__.py
@@ -5,6 +5,8 @@ from collections.abc import Iterator
from collections import OrderedDict
from io import BytesIO
+import warnings
+
import numpy as np
import numba as nb
import toolz as tz
@@ -457,8 +459,8 @@ def _interpolate_alpha(data, total, mask, how, alpha, span,
min_alpha, rescale_d
a_scaled, discrete_levels = a_scaled
# All-NaN objects (e.g. chunks of arrays with no data) are valid in
Datashader
- with np.warnings.catch_warnings():
- np.warnings.filterwarnings('ignore', r'All-NaN (slice|axis)
encountered')
+ with warnings.catch_warnings():
+ warnings.filterwarnings('ignore', r'All-NaN (slice|axis)
encountered')
norm_span = [np.nanmin(a_scaled).item(),
np.nanmax(a_scaled).item()]
if rescale_discrete_levels and discrete_levels is not None: # Only
valid for how='eq_hist'
--
2.39.1
++++++ datashader-0.14.3.tar.gz -> datashader-0.14.4.tar.gz ++++++
/work/SRC/openSUSE:Factory/python-datashader/datashader-0.14.3.tar.gz
/work/SRC/openSUSE:Factory/.python-datashader.new.4462/datashader-0.14.4.tar.gz
differ: char 5, line 1
++++++ numpy-1.24.patch ++++++
Index: datashader-0.14.4/datashader/tests/test_dask.py
===================================================================
--- datashader-0.14.4.orig/datashader/tests/test_dask.py
+++ datashader-0.14.4/datashader/tests/test_dask.py
@@ -999,8 +999,8 @@ def test_auto_range_line(DataFrame):
# axis1 ragged arrays
(dict(data={
- 'x': pd.array([[-4, -2, 0], [2, 4]]),
- 'y': pd.array([[0, -4, 0], [4, 0]])
+ 'x': pd.array([[-4, -2, 0], [2, 4]], dtype=object),
+ 'y': pd.array([[0, -4, 0], [4, 0]], dtype=object)
}, dtype='Ragged[float32]'), dict(x='x', y='y', axis=1))
])
def test_area_to_zero_fixedrange(DataFrame, df_kwargs, cvs_kwargs):
