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here is the log from the commit of package python-cmapfile for openSUSE:Factory
checked in at 2023-09-04 22:54:06
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/python-cmapfile (Old)
and /work/SRC/openSUSE:Factory/.python-cmapfile.new.1766 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python-cmapfile"
Mon Sep 4 22:54:06 2023 rev:4 rq:1108928 version:2023.8.30
Changes:
--------
--- /work/SRC/openSUSE:Factory/python-cmapfile/python-cmapfile.changes
2023-01-28 19:00:56.763929500 +0100
+++
/work/SRC/openSUSE:Factory/.python-cmapfile.new.1766/python-cmapfile.changes
2023-09-04 22:55:05.814980017 +0200
@@ -1,0 +2,6 @@
+Mon Sep 4 16:02:53 UTC 2023 - Dirk Müller <dmuel...@suse.com>
+
+- update to 2023.8.30:
+ * Drop support for Python 3.8 and numpy < 1.22 (NEP29).
+
+-------------------------------------------------------------------
Old:
----
cmapfile-2022.9.29.tar.gz
New:
----
cmapfile-2023.8.30.tar.gz
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-cmapfile.spec ++++++
--- /var/tmp/diff_new_pack.t78VUe/_old 2023-09-04 22:55:06.759013388 +0200
+++ /var/tmp/diff_new_pack.t78VUe/_new 2023-09-04 22:55:06.763013529 +0200
@@ -17,17 +17,17 @@
Name: python-cmapfile
-Version: 2022.9.29
+Version: 2023.8.30
Release: 0
Summary: Write Chimera Map (CMAP) files
License: BSD-3-Clause
Group: Development/Languages/Python
-URL: https://www.lfd.uci.edu/~gohlke/
+URL: https://github.com/cgohlke/cmapfile/
# SourceRepository: https://github.com/cgohlke/cmapfile
Source:
https://github.com/cgohlke/cmapfile/archive/v%{version}.tar.gz#/cmapfile-%{version}.tar.gz
-BuildRequires: %{python_module base >= 3.8}
+BuildRequires: %{python_module base >= 3.9}
BuildRequires: %{python_module h5py >= 3.1}
-BuildRequires: %{python_module numpy >= 1.19.2}
+BuildRequires: %{python_module numpy >= 1.22}
BuildRequires: %{python_module oiffile >= 2021.6.6}
BuildRequires: %{python_module pip}
BuildRequires: %{python_module scipy >= 1.5}
@@ -37,7 +37,7 @@
BuildRequires: fdupes
BuildRequires: python-rpm-macros
Requires: python-h5py >= 3.1
-Requires: python-numpy >= 1.19.2
+Requires: python-numpy >= 1.22
Requires: python-oiffile >= 2021.6.6
Requires: python-scipy >= 1.5
Requires: python-tifffile >= 2021.11.2
++++++ cmapfile-2022.9.29.tar.gz -> cmapfile-2023.8.30.tar.gz ++++++
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/cmapfile-2022.9.29/LICENSE
new/cmapfile-2023.8.30/LICENSE
--- old/cmapfile-2022.9.29/LICENSE 2022-09-30 06:20:32.000000000 +0200
+++ new/cmapfile-2023.8.30/LICENSE 2023-08-31 02:22:55.000000000 +0200
@@ -1,6 +1,6 @@
BSD 3-Clause License
-Copyright (c) 2014-2022, Christoph Gohlke
+Copyright (c) 2014-2023, Christoph Gohlke
All rights reserved.
Redistribution and use in source and binary forms, with or without
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/cmapfile-2022.9.29/MANIFEST.in
new/cmapfile-2023.8.30/MANIFEST.in
--- old/cmapfile-2022.9.29/MANIFEST.in 2022-09-30 06:20:32.000000000 +0200
+++ new/cmapfile-2023.8.30/MANIFEST.in 2023-08-31 02:22:55.000000000 +0200
@@ -2,6 +2,14 @@
include README.rst
include test.oib
+include cmapfile/py.typed
+
+exclude *.cmd
+recursive-exclude doc *
+recursive-exclude docs *
+recursive-exclude test *
+recursive-exclude tests *
+
recursive-exclude * __pycache__
recursive-exclude * *.py[co]
recursive-exclude * *Copy*
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/cmapfile-2022.9.29/README.rst
new/cmapfile-2023.8.30/README.rst
--- old/cmapfile-2022.9.29/README.rst 2022-09-30 06:20:32.000000000 +0200
+++ new/cmapfile-2023.8.30/README.rst 2023-08-31 02:22:55.000000000 +0200
@@ -12,52 +12,74 @@
:Author: `Christoph Gohlke <https://www.cgohlke.com>`_
:License: BSD 3-Clause
-:Version: 2022.9.29
+:Version: 2023.8.30
+
+Quickstart
+----------
+
+Install the cmapfile package and all dependencies from the
+`Python Package Index <https://pypi.org/project/cmapfile/>`_::
+
+ python -m pip install -U cmapfile[all]
+
+Print the command line usage::
+
+ python -m cmapfile --help
+
+See `Examples`_ for usage cases.
+
+Source code and support are available on
+`GitHub <https://github.com/cgohlke/cmapfile>`_.
Requirements
------------
-This release has been tested with the following requirements and dependencies
+This revision was tested with the following requirements and dependencies
(other versions may work):
-- `CPython 3.8.10, 3.9.13, 3.10.7, 3.11.0rc2 <https://www.python.org>`_
- (32-bit platforms are deprecated)
-- `Numpy 1.21.5 <https://pypi.org/project/numpy/>`_
-- `Scipy 1.8.1 <https://pypi.org/project/scipy/>`_
-- `H5py 3.7.0 <https://pypi.org/project/h5py/>`_
-- `Tifffile 2022.8.12 <https://pypi.org/project/tifffile/>`_ (optional)
-- `Oiffile 2022.2.2 <https://pypi.org/project/oiffile />`_ (optional)
+- `CPython <https://www.python.org>`_ 3.9.13, 3.10.11, 3.11.5, 3.12rc
+- `NumPy <https://pypi.org/project/numpy/>`_ 1.25.2
+- `Scipy <https://pypi.org/project/scipy/>`_ 1.11.2
+- `H5py <https://pypi.org/project/h5py/>`_ 3.9.0
+- `Tifffile <https://pypi.org/project/tifffile/>`_ 2023.8.30 (optional)
+- `Oiffile <https://pypi.org/project/oiffile/>`_ 2023.8.30 (optional)
-References
-----------
+Revisions
+---------
-1. Thomas Goddard. [Chimera-users] reading in hdf5 files in chimera.
- https://www.cgl.ucsf.edu/pipermail/chimera-users/2008-September/003052.html
-2. UCSF Chimera, an extensible molecular modeling system.
- https://www.cgl.ucsf.edu/chimera/
-3. Globals for Images - SimFCS. https://www.lfd.uci.edu/globals/
+2023.8.30
-Examples
---------
+- Drop support for Python 3.8 and numpy < 1.22 (NEP29).
-Print the command line usage::
+2022.9.29
- python -m cmapfile --help
+- Make subsampling compatible with ChimeraX (breaking).
+- Fix deprecated import of scipy.ndimage.interpolation.zoom.
+- Switch to Google style docstrings.
-Convert a 5D LSM file to CMAP file::
+2022.2.2
- python -m cmapfile "/my data directory/large.lsm"
+- Add type hints.
+- Drop support for Python 3.7 and numpy < 1.19 (NEP29).
-Convert all BIN files in the current directory to test.cmap. The BIN files
-are known to contain 128x128x64 samples of 16-bit integers. The CMAP file
-will store float32 maps using subsampling up to 16::
+2021.2.26
+
+- Fix LSM conversion with tifffile >= 2021.2.26.
+- Remove support for Python 3.6 (NEP 29).
- python -m cmapfile --shape 128,128,64 --step 1,1,2 --dtype i2
- --cmap test.cmap --subsample 16 --astype float32 *.bin
+2020.1.1
-Change the step size in the CMAP file::
+- Do not write name attribute.
+- Remove support for Python 2.7 and 3.5.
+- Update copyright.
+
+2018.8.30
- python -m cmapfile --step 1,1,1.5 test.cmap
+- Move cmapfile.py into cmapfile package.
+
+2014.10.10
+
+- Initial release.
Notes
-----
@@ -84,35 +106,51 @@
subsample_spacing (2, 2, 2) (attribute)
(more subsampled or alternate chunkshape versions of same data)
-Revisions
----------
+References
+----------
-2022.9.29
+1. Thomas Goddard. [Chimera-users] reading in hdf5 files in chimera.
+ https://www.cgl.ucsf.edu/pipermail/chimera-users/2008-September/003052.html
+2. UCSF Chimera, an extensible molecular modeling system.
+ https://www.cgl.ucsf.edu/chimera/
+3. Globals for Images - SimFCS. https://www.lfd.uci.edu/globals/
-- Make subsampling compatible with ChimeraX (breaking).
-- Fix deprecated import of scipy.ndimage.interpolation.zoom.
-- Switch to Google style docstrings.
+Examples
+--------
-2022.2.2
+Convert a 5D LSM file to CMAP file::
-- Add type hints.
-- Drop support for Python 3.7 and numpy < 1.19 (NEP29).
+ $ python -m cmapfile "/my data directory/large.lsm"
-2021.2.26
+Convert all BIN files in the current directory to test.cmap. The BIN files
+are known to contain 128x128x64 samples of 16-bit integers. The CMAP file
+will store float32 maps using subsampling up to 16::
-- Fix LSM conversion with tifffile >= 2021.2.26.
-- Remove support for Python 3.6 (NEP 29).
+ $ python -m cmapfile --shape 128,128,64 --step 1,1,2 --dtype i2 \
+ --cmap test.cmap --subsample 16 --astype float32 *.bin
-2020.1.1
+Change the step size in the CMAP file::
-- Do not write name attribute.
-- Remove support for Python 2.7 and 3.5.
-- Update copyright.
+ $ python -m cmapfile --step 1,1,1.5 test.cmap
-2018.8.30
+Print the cmapfile script usage::
-- Move cmapfile.py into cmapfile package.
+ $ python -m cmapfile --help
-2014.10.10
+ Usage: cmapfile [options] files
-- Initial release.
+ Convert volume data files to Chimera MAP files.
+
+ Options:
+ --version show program's version number and exit
+ -h, --help show this help message and exit
+ -q, --quiet
+ --filetype=FILETYPE type of input file(s), e.g. BIN, LSM, OIF, TIF
+ --dtype=DTYPE type of data in BIN files. e.g. uint16
+ --shape=SHAPE shape of data in BIN files in F order, e.g 256,256,32
+ --offset=OFFSET number of bytes to skip at beginning of BIN files
+ --step=STEP stepsize of data in files in F order, e.g 1.0,1.0,8.0
+ --cmap=CMAP name of output CMAP file
+ --astype=ASTYPE type of data in CMAP file. e.g. float32
+ --subsample=SUBSAMPLE
+ write subsampled datasets to CMAP file
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/cmapfile-2022.9.29/cmapfile/cmapfile.py
new/cmapfile-2023.8.30/cmapfile/cmapfile.py
--- old/cmapfile-2022.9.29/cmapfile/cmapfile.py 2022-09-30 06:20:32.000000000
+0200
+++ new/cmapfile-2023.8.30/cmapfile/cmapfile.py 2023-08-31 02:22:55.000000000
+0200
@@ -1,6 +1,6 @@
# cmapfile.py
-# Copyright (c) 2014-2022, Christoph Gohlke
+# Copyright (c) 2014-2023, Christoph Gohlke
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
@@ -42,52 +42,74 @@
:Author: `Christoph Gohlke <https://www.cgohlke.com>`_
:License: BSD 3-Clause
-:Version: 2022.9.29
+:Version: 2023.8.30
+
+Quickstart
+----------
+
+Install the cmapfile package and all dependencies from the
+`Python Package Index <https://pypi.org/project/cmapfile/>`_::
+
+ python -m pip install -U cmapfile[all]
+
+Print the command line usage::
+
+ python -m cmapfile --help
+
+See `Examples`_ for usage cases.
+
+Source code and support are available on
+`GitHub <https://github.com/cgohlke/cmapfile>`_.
Requirements
------------
-This release has been tested with the following requirements and dependencies
+This revision was tested with the following requirements and dependencies
(other versions may work):
-- `CPython 3.8.10, 3.9.13, 3.10.7, 3.11.0rc2 <https://www.python.org>`_
- (32-bit platforms are deprecated)
-- `Numpy 1.21.5 <https://pypi.org/project/numpy/>`_
-- `Scipy 1.8.1 <https://pypi.org/project/scipy/>`_
-- `H5py 3.7.0 <https://pypi.org/project/h5py/>`_
-- `Tifffile 2022.8.12 <https://pypi.org/project/tifffile/>`_ (optional)
-- `Oiffile 2022.2.2 <https://pypi.org/project/oiffile />`_ (optional)
+- `CPython <https://www.python.org>`_ 3.9.13, 3.10.11, 3.11.5, 3.12rc
+- `NumPy <https://pypi.org/project/numpy/>`_ 1.25.2
+- `Scipy <https://pypi.org/project/scipy/>`_ 1.11.2
+- `H5py <https://pypi.org/project/h5py/>`_ 3.9.0
+- `Tifffile <https://pypi.org/project/tifffile/>`_ 2023.8.30 (optional)
+- `Oiffile <https://pypi.org/project/oiffile/>`_ 2023.8.30 (optional)
-References
-----------
+Revisions
+---------
-1. Thomas Goddard. [Chimera-users] reading in hdf5 files in chimera.
- https://www.cgl.ucsf.edu/pipermail/chimera-users/2008-September/003052.html
-2. UCSF Chimera, an extensible molecular modeling system.
- https://www.cgl.ucsf.edu/chimera/
-3. Globals for Images - SimFCS. https://www.lfd.uci.edu/globals/
+2023.8.30
-Examples
---------
+- Drop support for Python 3.8 and numpy < 1.22 (NEP29).
-Print the command line usage::
+2022.9.29
- python -m cmapfile --help
+- Make subsampling compatible with ChimeraX (breaking).
+- Fix deprecated import of scipy.ndimage.interpolation.zoom.
+- Switch to Google style docstrings.
-Convert a 5D LSM file to CMAP file::
+2022.2.2
- python -m cmapfile "/my data directory/large.lsm"
+- Add type hints.
+- Drop support for Python 3.7 and numpy < 1.19 (NEP29).
-Convert all BIN files in the current directory to test.cmap. The BIN files
-are known to contain 128x128x64 samples of 16-bit integers. The CMAP file
-will store float32 maps using subsampling up to 16::
+2021.2.26
- python -m cmapfile --shape 128,128,64 --step 1,1,2 --dtype i2
- --cmap test.cmap --subsample 16 --astype float32 *.bin
+- Fix LSM conversion with tifffile >= 2021.2.26.
+- Remove support for Python 3.6 (NEP 29).
-Change the step size in the CMAP file::
+2020.1.1
- python -m cmapfile --step 1,1,1.5 test.cmap
+- Do not write name attribute.
+- Remove support for Python 2.7 and 3.5.
+- Update copyright.
+
+2018.8.30
+
+- Move cmapfile.py into cmapfile package.
+
+2014.10.10
+
+- Initial release.
Notes
-----
@@ -114,44 +136,60 @@
subsample_spacing (2, 2, 2) (attribute)
(more subsampled or alternate chunkshape versions of same data)
-Revisions
----------
+References
+----------
-2022.9.29
+1. Thomas Goddard. [Chimera-users] reading in hdf5 files in chimera.
+ https://www.cgl.ucsf.edu/pipermail/chimera-users/2008-September/003052.html
+2. UCSF Chimera, an extensible molecular modeling system.
+ https://www.cgl.ucsf.edu/chimera/
+3. Globals for Images - SimFCS. https://www.lfd.uci.edu/globals/
-- Make subsampling compatible with ChimeraX (breaking).
-- Fix deprecated import of scipy.ndimage.interpolation.zoom.
-- Switch to Google style docstrings.
+Examples
+--------
-2022.2.2
+Convert a 5D LSM file to CMAP file::
-- Add type hints.
-- Drop support for Python 3.7 and numpy < 1.19 (NEP29).
+ $ python -m cmapfile "/my data directory/large.lsm"
-2021.2.26
+Convert all BIN files in the current directory to test.cmap. The BIN files
+are known to contain 128x128x64 samples of 16-bit integers. The CMAP file
+will store float32 maps using subsampling up to 16::
-- Fix LSM conversion with tifffile >= 2021.2.26.
-- Remove support for Python 3.6 (NEP 29).
+ $ python -m cmapfile --shape 128,128,64 --step 1,1,2 --dtype i2 \
+ --cmap test.cmap --subsample 16 --astype float32 *.bin
-2020.1.1
+Change the step size in the CMAP file::
-- Do not write name attribute.
-- Remove support for Python 2.7 and 3.5.
-- Update copyright.
+ $ python -m cmapfile --step 1,1,1.5 test.cmap
-2018.8.30
+Print the cmapfile script usage::
-- Move cmapfile.py into cmapfile package.
+ $ python -m cmapfile --help
-2014.10.10
+ Usage: cmapfile [options] files
-- Initial release.
+ Convert volume data files to Chimera MAP files.
+
+ Options:
+ --version show program's version number and exit
+ -h, --help show this help message and exit
+ -q, --quiet
+ --filetype=FILETYPE type of input file(s), e.g. BIN, LSM, OIF, TIF
+ --dtype=DTYPE type of data in BIN files. e.g. uint16
+ --shape=SHAPE shape of data in BIN files in F order, e.g 256,256,32
+ --offset=OFFSET number of bytes to skip at beginning of BIN files
+ --step=STEP stepsize of data in files in F order, e.g 1.0,1.0,8.0
+ --cmap=CMAP name of output CMAP file
+ --astype=ASTYPE type of data in CMAP file. e.g. float32
+ --subsample=SUBSAMPLE
+ write subsampled datasets to CMAP file
"""
from __future__ import annotations
-__version__ = '2022.9.29'
+__version__ = '2023.8.30'
__all__ = [
'CmapFile',
@@ -162,34 +200,29 @@
'array2cmap',
]
-import sys
-import os
import glob
+import os
+import sys
import warnings
-import numpy
import h5py
+import numpy
try:
from scipy.ndimage import zoom
except ImportError:
from ndimage import zoom
-from tifffile import TiffFile, transpose_axes, natural_sorted, product
-from oiffile import OifFile
-
from typing import TYPE_CHECKING
-if TYPE_CHECKING:
- from typing import Any, Union, Sequence, Iterator
+from oiffile import OifFile
+from tifffile import TiffFile, natural_sorted, product, transpose_axes
- try:
- from numpy.typing import ArrayLike
- except ImportError:
- # numpy < 1.20
- from numpy import ndarray as ArrayLike
+if TYPE_CHECKING:
+ from collections.abc import Iterator, Sequence
+ from typing import Any
- PathLike = Union[str, os.PathLike]
+ from numpy.typing import ArrayLike, DTypeLike
class CmapFile(h5py.File):
@@ -208,7 +241,7 @@
mapcounter: int
def __init__(
- self, filename: PathLike, /, mode: str = 'w', **kwargs
+ self, filename: str | os.PathLike[Any], /, mode: str = 'w', **kwargs
) -> None:
h5py.File.__init__(self, name=filename, mode=mode, **kwargs)
self.mapcounter = 0
@@ -228,7 +261,7 @@
time: int | None = None,
channel: int | None = None,
symmetries=None,
- astype: numpy.dtype = None,
+ astype: DTypeLike | None = None,
subsample: int = 16,
chunks: bool = True,
compression: str | None = None,
@@ -323,13 +356,13 @@
compression=compression,
)
# create subsampled datasets
- for i, data in enumerate(subsamples(data, int(subsample))):
+ for i, subsampled in enumerate(subsamples(data, int(subsample))):
sample = 2 ** (i + 1)
if verbose:
print(f'{sample} ', end='', flush=True)
dset = group.create_dataset(
f'data{self.mapcounter:05d}_{i + 2}',
- data=data,
+ data=subsampled,
chunks=chunks,
compression=compression,
)
@@ -349,12 +382,12 @@
def bin2cmap(
- binfiles: Sequence[PathLike] | str,
+ binfiles: Sequence[str | os.PathLike[Any]] | str,
/,
shape: tuple[int, ...],
dtype: numpy.dtype,
offset: int = 0,
- cmapfile: PathLike | None = None,
+ cmapfile: str | os.PathLike[Any] | None = None,
fail: bool = True,
**kwargs,
) -> None:
@@ -418,9 +451,9 @@
def tif2cmap(
- tiffiles: Sequence[PathLike],
+ tiffiles: Sequence[str | os.PathLike[Any]],
/,
- cmapfile: PathLike | None = None,
+ cmapfile: str | os.PathLike[Any] | None = None,
fail: bool = True,
**kwargs,
) -> None:
@@ -473,7 +506,10 @@
def lsm2cmap(
- lsmfile: PathLike, /, cmapfile: PathLike | None = None, **kwargs
+ lsmfile: str | os.PathLike[Any],
+ /,
+ cmapfile: str | os.PathLike[Any] | None = None,
+ **kwargs,
) -> None:
"""Convert 5D TZCYX LSM file to Chimera MAP files, one per channel.
@@ -544,7 +580,11 @@
def array2cmap(
- data: numpy.ndarray, /, axes: str, cmapfile: PathLike, **kwargs
+ data: numpy.ndarray,
+ /,
+ axes: str,
+ cmapfile: str | os.PathLike[Any],
+ **kwargs,
) -> None:
"""Save numpy ndarray to Chimera MAP files, one per channel.
@@ -586,7 +626,10 @@
def oif2cmap(
- oiffile: PathLike, /, cmapfile: PathLike = None, **kwargs
+ oiffile: str | os.PathLike[Any],
+ /,
+ cmapfile: str | os.PathLike[Any] | None = None,
+ **kwargs,
) -> None:
"""Convert OIF or OIB files to Chimera MAP files, one per channel.
@@ -718,7 +761,9 @@
raise ValueError(f"not a '{sep}' separated list of numbers") from exc
-def parse_files(files: Sequence[PathLike], /) -> Sequence[PathLike]:
+def parse_files(
+ files: Sequence[str | os.PathLike[Any]], /
+) -> Sequence[str | os.PathLike[Any]]:
"""Return list of file names from pattern or list of file names.
Parameters:
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/cmapfile-2022.9.29/setup.py
new/cmapfile-2023.8.30/setup.py
--- old/cmapfile-2022.9.29/setup.py 2022-09-30 06:20:32.000000000 +0200
+++ new/cmapfile-2023.8.30/setup.py 2023-08-31 02:22:55.000000000 +0200
@@ -1,9 +1,9 @@
# cmapfile/setup.py
-"""Cmapfile package setuptools script."""
+"""Cmapfile package Setuptools script."""
-import sys
import re
+import sys
from setuptools import setup
@@ -16,15 +16,15 @@
return match.groups()[0]
-with open('cmapfile/cmapfile.py') as fh:
+with open('cmapfile/cmapfile.py', encoding='utf-8') as fh:
code = fh.read()
-version = search(r"__version__ = '(.*?)'", code)
+version = search(r"__version__ = '(.*?)'", code).replace('.x.x', '.dev')
description = search(r'"""(.*)\.(?:\r\n|\r|\n)', code)
readme = search(
- r'(?:\r\n|\r|\n){2}"""(.*)"""(?:\r\n|\r|\n){2}[__version__|from]',
+ r'(?:\r\n|\r|\n){2}"""(.*)"""(?:\r\n|\r|\n){2}from __future__',
code,
re.MULTILINE | re.DOTALL,
)
@@ -42,10 +42,10 @@
license = license.replace('# ', '').replace('#', '')
if 'sdist' in sys.argv:
- with open('LICENSE', 'w') as fh:
+ with open('LICENSE', 'w', encoding='utf-8') as fh:
fh.write('BSD 3-Clause License\n\n')
fh.write(license)
- with open('README.rst', 'w') as fh:
+ with open('README.rst', 'w', encoding='utf-8') as fh:
fh.write(readme)
setup(
@@ -54,6 +54,7 @@
license='BSD',
description=description,
long_description=readme,
+ long_description_content_type='text/x-rst',
author='Christoph Gohlke',
author_email='cgoh...@cgohlke.com',
url='https://www.cgohlke.com',
@@ -63,14 +64,16 @@
# 'Documentation': 'https://',
},
packages=['cmapfile'],
- python_requires='>=3.8',
+ package_data={'cmapfile': ['py.typed']},
+ python_requires='>=3.9',
install_requires=[
- 'numpy>=1.19.2',
- 'scipy>=1.5',
- 'h5py>=3.1',
- 'tifffile>=2021.11.2',
- 'oiffile>=2021.6.6',
+ 'numpy',
+ 'scipy',
+ 'h5py',
+ 'tifffile',
+ 'oiffile',
],
+ extras_require={'all': ['imagecodecs']},
entry_points={'console_scripts': ['cmapfile = cmapfile:main']},
platforms=['any'],
classifiers=[
@@ -80,9 +83,9 @@
'Intended Audience :: Developers',
'Operating System :: OS Independent',
'Programming Language :: Python :: 3 :: Only',
- 'Programming Language :: Python :: 3.8',
'Programming Language :: Python :: 3.9',
'Programming Language :: Python :: 3.10',
'Programming Language :: Python :: 3.11',
+ 'Programming Language :: Python :: 3.12',
],
)
